miRNA display CGI


Results 21 - 40 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 21930 0.66 0.981878
Target:  5'- cCGCCGGCAucggguaGACGGCGCUaGCgGCGCu- -3'
miRNA:   3'- uGCGGCUGU-------UUGUUGUGG-CG-UGCGuc -5'
29987 3' -53.6 NC_006273.1 + 72643 0.66 0.98398
Target:  5'- aGCGCgGGCGucgaAGCGCUugGCGCGUAGu -3'
miRNA:   3'- -UGCGgCUGUuug-UUGUGG--CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 151223 0.66 0.98398
Target:  5'- -gGCCGACAcGCucuGgGCCGCGcCGCu- -3'
miRNA:   3'- ugCGGCUGUuUGu--UgUGGCGU-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 120232 0.66 0.983426
Target:  5'- -aGCCGaagcaccuggcaguGCAGGCGACcaaagcuuCCGCugGCGGc -3'
miRNA:   3'- ugCGGC--------------UGUUUGUUGu-------GGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 215575 0.66 0.987321
Target:  5'- -aGCCGGugcGGCAACACCaGCcagcaaaagGCGCAGa -3'
miRNA:   3'- ugCGGCUgu-UUGUUGUGG-CG---------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 130205 0.66 0.986381
Target:  5'- cCGCCGucuccggcuaccuggGCGAggccGCGGCGCCGCGCaucCAGg -3'
miRNA:   3'- uGCGGC---------------UGUU----UGUUGUGGCGUGc--GUC- -5'
29987 3' -53.6 NC_006273.1 + 40233 0.66 0.985725
Target:  5'- cAUGCCGGCAGA--AC-CCGguUGCGGc -3'
miRNA:   3'- -UGCGGCUGUUUguUGuGGCguGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 55954 0.66 0.983797
Target:  5'- -aGCUGAgAcGCAGCACCGUgccgcugACGCGa -3'
miRNA:   3'- ugCGGCUgUuUGUUGUGGCG-------UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 136101 0.66 0.982078
Target:  5'- gACGCCGugGgcGGCGAUcgcgcuuuugACCGCGaGCGGc -3'
miRNA:   3'- -UGCGGCugU--UUGUUG----------UGGCGUgCGUC- -5'
29987 3' -53.6 NC_006273.1 + 150755 0.66 0.987321
Target:  5'- cGCGCUG-CAGAuCAGcCGCCGgGCGCu- -3'
miRNA:   3'- -UGCGGCuGUUU-GUU-GUGGCgUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 42443 0.66 0.987321
Target:  5'- uGCGCCGACu-GCGGgaaGCUGUccACGUAGa -3'
miRNA:   3'- -UGCGGCUGuuUGUUg--UGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 218208 0.66 0.987321
Target:  5'- -gGCCGACGgcgGACGAC-CgGCaugGCGCGGc -3'
miRNA:   3'- ugCGGCUGU---UUGUUGuGgCG---UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 39524 0.66 0.987321
Target:  5'- cGCGUCucgGACAAgaucacggcgcGCAACauGCCGCGCGCc- -3'
miRNA:   3'- -UGCGG---CUGUU-----------UGUUG--UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 168093 0.66 0.982078
Target:  5'- cCGCCGGC-----GCGCCaGCAUGUAGg -3'
miRNA:   3'- uGCGGCUGuuuguUGUGG-CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 96222 0.66 0.985725
Target:  5'- uUGuuGACAAGCGAUggaggACCGCACcCAa -3'
miRNA:   3'- uGCggCUGUUUGUUG-----UGGCGUGcGUc -5'
29987 3' -53.6 NC_006273.1 + 155190 0.66 0.982078
Target:  5'- gACGCCGAacucauGGAUcACACCagucuGUACGCGGa -3'
miRNA:   3'- -UGCGGCUg-----UUUGuUGUGG-----CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 57410 0.66 0.987321
Target:  5'- -gGCCGACAGGucCGAgAugucCUGCACGUAGa -3'
miRNA:   3'- ugCGGCUGUUU--GUUgU----GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 144107 0.66 0.987321
Target:  5'- cGCGCUGGCucGCGACGaggguCUGCGCGaCAu -3'
miRNA:   3'- -UGCGGCUGuuUGUUGU-----GGCGUGC-GUc -5'
29987 3' -53.6 NC_006273.1 + 104587 0.66 0.987321
Target:  5'- cGCGCCGGC--ACGAUGCaGCugGCc- -3'
miRNA:   3'- -UGCGGCUGuuUGUUGUGgCGugCGuc -5'
29987 3' -53.6 NC_006273.1 + 124393 0.66 0.98398
Target:  5'- aGCGCCGACA------GCCGCGCGa-- -3'
miRNA:   3'- -UGCGGCUGUuuguugUGGCGUGCguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.