Results 41 - 60 of 471 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29987 | 3' | -53.6 | NC_006273.1 | + | 128099 | 0.66 | 0.987321 |
Target: 5'- gGCGCgGGCucguGCAGCACCgggugGCACaGCGu -3' miRNA: 3'- -UGCGgCUGuu--UGUUGUGG-----CGUG-CGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 33732 | 0.66 | 0.990097 |
Target: 5'- cACGCCGuguACucguGACGuAUACUGgCGCGCAGc -3' miRNA: 3'- -UGCGGC---UGu---UUGU-UGUGGC-GUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 177927 | 0.66 | 0.983797 |
Target: 5'- gGCGCacaGACAaacaGACAGCcacacccgacacaGCCGCAuguUGCAGa -3' miRNA: 3'- -UGCGg--CUGU----UUGUUG-------------UGGCGU---GCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 142054 | 0.66 | 0.988775 |
Target: 5'- cACGUCGuCucgcGGCAGCGCCGC-CaGCGGc -3' miRNA: 3'- -UGCGGCuGu---UUGUUGUGGCGuG-CGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 115972 | 0.66 | 0.988775 |
Target: 5'- gGCGCUGGCugAGACGG-GCgGCGCGCGu -3' miRNA: 3'- -UGCGGCUG--UUUGUUgUGgCGUGCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 40233 | 0.66 | 0.985725 |
Target: 5'- cAUGCCGGCAGA--AC-CCGguUGCGGc -3' miRNA: 3'- -UGCGGCUGUUUguUGuGGCguGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 167031 | 0.66 | 0.98398 |
Target: 5'- gGCGCUGAUuuGCAgcuGCACgGC-CGUGGa -3' miRNA: 3'- -UGCGGCUGuuUGU---UGUGgCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 72550 | 0.66 | 0.990097 |
Target: 5'- gUGCCGAC--GCAAgGCUGCGaugaggcccCGCAGc -3' miRNA: 3'- uGCGGCUGuuUGUUgUGGCGU---------GCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 21930 | 0.66 | 0.981878 |
Target: 5'- cCGCCGGCAucggguaGACGGCGCUaGCgGCGCu- -3' miRNA: 3'- uGCGGCUGU-------UUGUUGUGG-CG-UGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 22740 | 0.66 | 0.982078 |
Target: 5'- uCGCCGAgGuACggUACCGCugGgAu -3' miRNA: 3'- uGCGGCUgUuUGuuGUGGCGugCgUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 197134 | 0.66 | 0.990097 |
Target: 5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3' miRNA: 3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 81198 | 0.66 | 0.98398 |
Target: 5'- uUGCUGAUAGACAcACACUGCAaauCGGg -3' miRNA: 3'- uGCGGCUGUUUGU-UGUGGCGUgc-GUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 215575 | 0.66 | 0.987321 |
Target: 5'- -aGCCGGugcGGCAACACCaGCcagcaaaagGCGCAGa -3' miRNA: 3'- ugCGGCUgu-UUGUUGUGG-CG---------UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 130205 | 0.66 | 0.986381 |
Target: 5'- cCGCCGucuccggcuaccuggGCGAggccGCGGCGCCGCGCaucCAGg -3' miRNA: 3'- uGCGGC---------------UGUU----UGUUGUGGCGUGc--GUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 38534 | 0.66 | 0.98398 |
Target: 5'- gACGaggaCGACGGGCAcCACCGCGgucaaaagguCGCAc -3' miRNA: 3'- -UGCg---GCUGUUUGUuGUGGCGU----------GCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 34603 | 0.66 | 0.98398 |
Target: 5'- gAUGUCGuACuuGCcguGCGCCGUAgCGCAGg -3' miRNA: 3'- -UGCGGC-UGuuUGu--UGUGGCGU-GCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 136101 | 0.66 | 0.982078 |
Target: 5'- gACGCCGugGgcGGCGAUcgcgcuuuugACCGCGaGCGGc -3' miRNA: 3'- -UGCGGCugU--UUGUUG----------UGGCGUgCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 124393 | 0.66 | 0.98398 |
Target: 5'- aGCGCCGACA------GCCGCGCGa-- -3' miRNA: 3'- -UGCGGCUGUuuguugUGGCGUGCguc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 117191 | 0.66 | 0.98398 |
Target: 5'- cCGCCGAgcguuCGGGCGACAgCCGCAguCAGg -3' miRNA: 3'- uGCGGCU-----GUUUGUUGU-GGCGUgcGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 197299 | 0.66 | 0.982078 |
Target: 5'- gGCGCCcGCcgcCGAgGCCGCGCGgCGGc -3' miRNA: 3'- -UGCGGcUGuuuGUUgUGGCGUGC-GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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