miRNA display CGI


Results 61 - 80 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 168093 0.66 0.982078
Target:  5'- cCGCCGGC-----GCGCCaGCAUGUAGg -3'
miRNA:   3'- uGCGGCUGuuuguUGUGG-CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 105823 0.66 0.987167
Target:  5'- cCGCCGACGAcuauuagagcgucACAgccgagGCGgCGCGgCGCAGc -3'
miRNA:   3'- uGCGGCUGUU-------------UGU------UGUgGCGU-GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 179852 0.66 0.990097
Target:  5'- aGCGUCGACAGACggU-CCGUAgagggccaGCAGu -3'
miRNA:   3'- -UGCGGCUGUUUGuuGuGGCGUg-------CGUC- -5'
29987 3' -53.6 NC_006273.1 + 47844 0.66 0.985725
Target:  5'- uCGCUGGgccuCGGCGCCGUACgGCGGg -3'
miRNA:   3'- uGCGGCUguuuGUUGUGGCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 173115 0.66 0.985725
Target:  5'- cGCGCCGA--AACAACACguagggcaugaGCGUGCAGg -3'
miRNA:   3'- -UGCGGCUguUUGUUGUGg----------CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 189366 0.66 0.985725
Target:  5'- uUGCuCGugAGGCGGCACgCGUGUGCGGg -3'
miRNA:   3'- uGCG-GCugUUUGUUGUG-GCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 118209 0.66 0.98398
Target:  5'- aACGCuCGGCGGACGcCGCuuuaauaaCGCACGCc- -3'
miRNA:   3'- -UGCG-GCUGUUUGUuGUG--------GCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 187770 0.66 0.98398
Target:  5'- uACGUCGACGcagguAGCGGCuggguuGCUcggGCACGCGGa -3'
miRNA:   3'- -UGCGGCUGU-----UUGUUG------UGG---CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 55954 0.66 0.983797
Target:  5'- -aGCUGAgAcGCAGCACCGUgccgcugACGCGa -3'
miRNA:   3'- ugCGGCUgUuUGUUGUGGCG-------UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 22740 0.66 0.982078
Target:  5'- uCGCCGAgGuACggUACCGCugGgAu -3'
miRNA:   3'- uGCGGCUgUuUGuuGUGGCGugCgUc -5'
29987 3' -53.6 NC_006273.1 + 92178 0.66 0.982078
Target:  5'- aACGUCGuACAAGCuACAcaccccaaaaacCCGCGCGCc- -3'
miRNA:   3'- -UGCGGC-UGUUUGuUGU------------GGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 81198 0.66 0.98398
Target:  5'- uUGCUGAUAGACAcACACUGCAaauCGGg -3'
miRNA:   3'- uGCGGCUGUUUGU-UGUGGCGUgc-GUC- -5'
29987 3' -53.6 NC_006273.1 + 111377 0.66 0.98398
Target:  5'- aACGCCgGACGAGCugGACAa-GCACaGCGGc -3'
miRNA:   3'- -UGCGG-CUGUUUG--UUGUggCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 151223 0.66 0.98398
Target:  5'- -gGCCGACAcGCucuGgGCCGCGcCGCu- -3'
miRNA:   3'- ugCGGCUGUuUGu--UgUGGCGU-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 72643 0.66 0.98398
Target:  5'- aGCGCgGGCGucgaAGCGCUugGCGCGUAGu -3'
miRNA:   3'- -UGCGgCUGUuug-UUGUGG--CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 33732 0.66 0.990097
Target:  5'- cACGCCGuguACucguGACGuAUACUGgCGCGCAGc -3'
miRNA:   3'- -UGCGGC---UGu---UUGU-UGUGGC-GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 34603 0.66 0.98398
Target:  5'- gAUGUCGuACuuGCcguGCGCCGUAgCGCAGg -3'
miRNA:   3'- -UGCGGC-UGuuUGu--UGUGGCGU-GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 96222 0.66 0.985725
Target:  5'- uUGuuGACAAGCGAUggaggACCGCACcCAa -3'
miRNA:   3'- uGCggCUGUUUGUUG-----UGGCGUGcGUc -5'
29987 3' -53.6 NC_006273.1 + 39578 0.66 0.985725
Target:  5'- cUGCUGACGAGC-GCGCa--GCGCGGg -3'
miRNA:   3'- uGCGGCUGUUUGuUGUGgcgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 167031 0.66 0.98398
Target:  5'- gGCGCUGAUuuGCAgcuGCACgGC-CGUGGa -3'
miRNA:   3'- -UGCGGCUGuuUGU---UGUGgCGuGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.