miRNA display CGI


Results 81 - 100 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 197038 0.66 0.98398
Target:  5'- -aGCUGACGAGCGGCAgCgGCgACGaCGGu -3'
miRNA:   3'- ugCGGCUGUUUGUUGU-GgCG-UGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 71095 0.66 0.985725
Target:  5'- gGCGCCGACGcGC-ACACCuGCGaGUAc -3'
miRNA:   3'- -UGCGGCUGUuUGuUGUGG-CGUgCGUc -5'
29987 3' -53.6 NC_006273.1 + 179852 0.66 0.990097
Target:  5'- aGCGUCGACAGACggU-CCGUAgagggccaGCAGu -3'
miRNA:   3'- -UGCGGCUGUUUGuuGuGGCGUg-------CGUC- -5'
29987 3' -53.6 NC_006273.1 + 154698 0.66 0.988775
Target:  5'- -aGCCGugAGACGcugcuCACCuuGCGCAu -3'
miRNA:   3'- ugCGGCugUUUGUu----GUGGcgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 6258 0.66 0.988775
Target:  5'- uCGCCGGCGgcgaAACAAcCAgCGCcggguacugugGCGCAGu -3'
miRNA:   3'- uGCGGCUGU----UUGUU-GUgGCG-----------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 68149 0.66 0.988775
Target:  5'- uGCGCCagGAUcccggGAGCAGCuCCGuCACGCGu -3'
miRNA:   3'- -UGCGG--CUG-----UUUGUUGuGGC-GUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 123734 0.66 0.987321
Target:  5'- aGCGCC-ACAAACGAgGgaagacCCGCA-GCAGg -3'
miRNA:   3'- -UGCGGcUGUUUGUUgU------GGCGUgCGUC- -5'
29987 3' -53.6 NC_006273.1 + 197134 0.66 0.990097
Target:  5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3'
miRNA:   3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 99993 0.66 0.987321
Target:  5'- uGCGUgCGA-AAGCAGCGCgUGCACGCGu -3'
miRNA:   3'- -UGCG-GCUgUUUGUUGUG-GCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 115972 0.66 0.988775
Target:  5'- gGCGCUGGCugAGACGG-GCgGCGCGCGu -3'
miRNA:   3'- -UGCGGCUG--UUUGUUgUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 2406 0.66 0.982078
Target:  5'- gGCGCCcGCcgcCGAgGCCGCGCGgCGGc -3'
miRNA:   3'- -UGCGGcUGuuuGUUgUGGCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 109239 0.66 0.987321
Target:  5'- uGCGaaCCGAC-AugGGCGuCCGCGUGCAGg -3'
miRNA:   3'- -UGC--GGCUGuUugUUGU-GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 169823 0.66 0.990097
Target:  5'- -gGCCGGCAGGgcccCuuCGCCGCAgcUGUAGg -3'
miRNA:   3'- ugCGGCUGUUU----GuuGUGGCGU--GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 134101 0.66 0.990097
Target:  5'- gGCaCCGGCGGACAcaucaucauggGCACUGCGgGCu- -3'
miRNA:   3'- -UGcGGCUGUUUGU-----------UGUGGCGUgCGuc -5'
29987 3' -53.6 NC_006273.1 + 33732 0.66 0.990097
Target:  5'- cACGCCGuguACucguGACGuAUACUGgCGCGCAGc -3'
miRNA:   3'- -UGCGGC---UGu---UUGU-UGUGGC-GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 61265 0.66 0.988775
Target:  5'- -aGCC-ACu-GCAGCGCgGCGCGCGc -3'
miRNA:   3'- ugCGGcUGuuUGUUGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 30592 0.66 0.990097
Target:  5'- uGCGCgaGACcGGCGGCACCG-GCGCc- -3'
miRNA:   3'- -UGCGg-CUGuUUGUUGUGGCgUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 72550 0.66 0.990097
Target:  5'- gUGCCGAC--GCAAgGCUGCGaugaggcccCGCAGc -3'
miRNA:   3'- uGCGGCUGuuUGUUgUGGCGU---------GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 64195 0.66 0.990097
Target:  5'- gACGgaagCGACGAGCcuacugcaccGACAUCGCGCGCu- -3'
miRNA:   3'- -UGCg---GCUGUUUG----------UUGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 128964 0.66 0.989319
Target:  5'- gGCGUCGGCcGuguuuuugagcgcgcGCAGCACCGUGUGCAu -3'
miRNA:   3'- -UGCGGCUGuU---------------UGUUGUGGCGUGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.