miRNA display CGI


Results 1 - 20 of 471 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 1480 1.09 0.007554
Target:  5'- cACGCCGACAAACAACACCGCACGCAGa -3'
miRNA:   3'- -UGCGGCUGUUUGUUGUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 145075 0.84 0.273774
Target:  5'- -aGCCG-CGGGCGACGCCGCugGCGGc -3'
miRNA:   3'- ugCGGCuGUUUGUUGUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38830 0.83 0.280226
Target:  5'- aGCGCCGGCugAGGCAGCAgcgUCGCGCGCGGg -3'
miRNA:   3'- -UGCGGCUG--UUUGUUGU---GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 233722 0.83 0.280226
Target:  5'- aGCGCCGGCugAGGCAGCAgcgUCGCGCGCGGg -3'
miRNA:   3'- -UGCGGCUG--UUUGUUGU---GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 22254 0.8 0.399919
Target:  5'- gGCGCCGGCGAGCGACGCgGCucCGCc- -3'
miRNA:   3'- -UGCGGCUGUUUGUUGUGgCGu-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 100911 0.79 0.452483
Target:  5'- uAC-CCGACGAgGCGGCGCCGCGCuGCAGa -3'
miRNA:   3'- -UGcGGCUGUU-UGUUGUGGCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 133423 0.78 0.53774
Target:  5'- -gGCCGuCAAGCGACGCgacggcgcgCGCACGCGGg -3'
miRNA:   3'- ugCGGCuGUUUGUUGUG---------GCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 36895 0.77 0.557485
Target:  5'- cGCGUCGuagGCGAACAcgGCGCCGUACGCGu -3'
miRNA:   3'- -UGCGGC---UGUUUGU--UGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 110942 0.77 0.587466
Target:  5'- aGCGUCGGCGAGCcGCGCaCGCccGCGCGGc -3'
miRNA:   3'- -UGCGGCUGUUUGuUGUG-GCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 2027 0.76 0.62785
Target:  5'- cCGCCGGCGggGAC-GCGCCGUGCGCGa -3'
miRNA:   3'- uGCGGCUGU--UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 196920 0.76 0.62785
Target:  5'- cCGCCGGCGggGAC-GCGCCGUGCGCGa -3'
miRNA:   3'- uGCGGCUGU--UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 182046 0.76 0.62785
Target:  5'- uUGCCGAuUGAGCAACACUGUugGCAu -3'
miRNA:   3'- uGCGGCU-GUUUGUUGUGGCGugCGUc -5'
29987 3' -53.6 NC_006273.1 + 86691 0.76 0.64202
Target:  5'- gAUGCCGcAUAGGCGACggaggagcuccagcaGCUGCGCGCAGa -3'
miRNA:   3'- -UGCGGC-UGUUUGUUG---------------UGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 63977 0.76 0.64809
Target:  5'- -aGCCGACAcGCcaaggguCACCGCACGguGg -3'
miRNA:   3'- ugCGGCUGUuUGuu-----GUGGCGUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 100005 0.75 0.658195
Target:  5'- cCGCCGGCAGugGCGugGuuGCugGCGGu -3'
miRNA:   3'- uGCGGCUGUU--UGUugUggCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 92090 0.75 0.66828
Target:  5'- aGCGCCGACAacuccgacaugcAAUAACGCCGUAgGCc- -3'
miRNA:   3'- -UGCGGCUGU------------UUGUUGUGGCGUgCGuc -5'
29987 3' -53.6 NC_006273.1 + 37115 0.75 0.66828
Target:  5'- aGCGCCG-CAAGUAACGCCGCAgGCc- -3'
miRNA:   3'- -UGCGGCuGUUUGUUGUGGCGUgCGuc -5'
29987 3' -53.6 NC_006273.1 + 38107 0.75 0.678336
Target:  5'- gGCGCCGACucgcgcccCAGCGCCaGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGuuu-----GUUGUGG-CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 233000 0.75 0.678336
Target:  5'- gGCGCCGACucgcgcccCAGCGCCaGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGuuu-----GUUGUGG-CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 213681 0.75 0.678336
Target:  5'- cGCGCCGACAAaggccuGCGGCgACgGCugGCAc -3'
miRNA:   3'- -UGCGGCUGUU------UGUUG-UGgCGugCGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.