miRNA display CGI


Results 21 - 40 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 103759 0.75 0.688356
Target:  5'- cGCGCCGGuacuCGAGCA--ACCGCGCGCGu -3'
miRNA:   3'- -UGCGGCU----GUUUGUugUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 194439 0.75 0.697334
Target:  5'- gUGCUgGGCAAgcgagucGCGACGCCGCACGCGu -3'
miRNA:   3'- uGCGG-CUGUU-------UGUUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 134933 0.75 0.698329
Target:  5'- cCGCCGACAc-CGGCGCCGCgugACGCGc -3'
miRNA:   3'- uGCGGCUGUuuGUUGUGGCG---UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 73696 0.75 0.708248
Target:  5'- -gGCCGugGAGCGAgUGCCGC-CGCAGc -3'
miRNA:   3'- ugCGGCugUUUGUU-GUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 1740 0.75 0.708248
Target:  5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3'
miRNA:   3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 196632 0.75 0.708248
Target:  5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3'
miRNA:   3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 102993 0.75 0.708248
Target:  5'- cGCGCCaGACcggaGACGCCGuCGCGCAGc -3'
miRNA:   3'- -UGCGG-CUGuuugUUGUGGC-GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 56380 0.75 0.712199
Target:  5'- cCGCCGGCGuuuucuccaucgcggGACcGCGCCGUGCGCAc -3'
miRNA:   3'- uGCGGCUGU---------------UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 143413 0.74 0.727888
Target:  5'- cACGCCGGC--GCGGCcuGCCGCGCGUu- -3'
miRNA:   3'- -UGCGGCUGuuUGUUG--UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 41508 0.74 0.736625
Target:  5'- gGCGUCGGCGugaggauGGCAGCGCCgGCGCcaGCAGg -3'
miRNA:   3'- -UGCGGCUGU-------UUGUUGUGG-CGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 125238 0.74 0.737592
Target:  5'- aGCGgaGACGAACAacgucuGCACCGgGCGCGGc -3'
miRNA:   3'- -UGCggCUGUUUGU------UGUGGCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 234348 0.74 0.737592
Target:  5'- gACGCCGugGcccGGCGuCGCCGUagGCGCAGc -3'
miRNA:   3'- -UGCGGCugU---UUGUuGUGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 39455 0.74 0.737592
Target:  5'- gACGCCGugGcccGGCGuCGCCGUagGCGCAGc -3'
miRNA:   3'- -UGCGGCugU---UUGUuGUGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 227732 0.74 0.746248
Target:  5'- -gGCCGACAAaucGCAGCugucuucGCCGC-CGCAGc -3'
miRNA:   3'- ugCGGCUGUU---UGUUG-------UGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 104256 0.74 0.746248
Target:  5'- cCGCCGAUGagcuuacGACGACACgGCGCGUAa -3'
miRNA:   3'- uGCGGCUGU-------UUGUUGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 193918 0.74 0.75672
Target:  5'- aGCGCCGuguugugaGCAGACGACGuuGgAUGCGGg -3'
miRNA:   3'- -UGCGGC--------UGUUUGUUGUggCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 142784 0.74 0.75672
Target:  5'- cCGCUGGCGAGCAACAgcagccgccgUCGCugGUGGg -3'
miRNA:   3'- uGCGGCUGUUUGUUGU----------GGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 21539 0.73 0.765191
Target:  5'- gGCGCUGGCGuuucgagGACGGCGgCGCGgCGCAGc -3'
miRNA:   3'- -UGCGGCUGU-------UUGUUGUgGCGU-GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 70930 0.73 0.775418
Target:  5'- cGCGCCGACAucgucaucgAGCGGcCGCgGC-CGCAGa -3'
miRNA:   3'- -UGCGGCUGU---------UUGUU-GUGgCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 36434 0.73 0.775418
Target:  5'- uCGCCG-CAGAgAAU-CCGCACGCGGu -3'
miRNA:   3'- uGCGGCuGUUUgUUGuGGCGUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.