Results 41 - 60 of 471 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29987 | 3' | -53.6 | NC_006273.1 | + | 36434 | 0.73 | 0.775418 |
Target: 5'- uCGCCG-CAGAgAAU-CCGCACGCGGu -3' miRNA: 3'- uGCGGCuGUUUgUUGuGGCGUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 34248 | 0.73 | 0.783672 |
Target: 5'- cCGCCGGCAGGCAGCgGCCGaugaguuCGCGCu- -3' miRNA: 3'- uGCGGCUGUUUGUUG-UGGC-------GUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 43135 | 0.73 | 0.784583 |
Target: 5'- -aGCuCGuuGAACAGCACCGUACGCc- -3' miRNA: 3'- ugCG-GCugUUUGUUGUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 204204 | 0.73 | 0.784583 |
Target: 5'- gACGCCGGCcGGCAAUGgaGCACGCu- -3' miRNA: 3'- -UGCGGCUGuUUGUUGUggCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 159933 | 0.73 | 0.793614 |
Target: 5'- cUGCCGGC-GACGGCuCCGC-CGCAGc -3' miRNA: 3'- uGCGGCUGuUUGUUGuGGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 196577 | 0.73 | 0.793614 |
Target: 5'- gGCGCucCGACAGACGuuGCUGCGCGCc- -3' miRNA: 3'- -UGCG--GCUGUUUGUugUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 153446 | 0.73 | 0.793614 |
Target: 5'- gGCGCCGGCAAGacuucCAGCAUCcagguGCugGCGGc -3' miRNA: 3'- -UGCGGCUGUUU-----GUUGUGG-----CGugCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 148782 | 0.73 | 0.793614 |
Target: 5'- -gGCCGGC-GGCGGCGCCGUGCGUc- -3' miRNA: 3'- ugCGGCUGuUUGUUGUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 1684 | 0.73 | 0.793614 |
Target: 5'- gGCGCucCGACAGACGuuGCUGCGCGCc- -3' miRNA: 3'- -UGCG--GCUGUUUGUugUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 55341 | 0.73 | 0.793614 |
Target: 5'- cACGCCGA-AGACGGCGCCGCucuCGUu- -3' miRNA: 3'- -UGCGGCUgUUUGUUGUGGCGu--GCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 126748 | 0.73 | 0.802503 |
Target: 5'- -aGuCCGGCAGGCccuGACGCUGCGCGUGGu -3' miRNA: 3'- ugC-GGCUGUUUG---UUGUGGCGUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 205635 | 0.73 | 0.802503 |
Target: 5'- cGCGCCGuCGAGacccuGCACUGCAUGCGc -3' miRNA: 3'- -UGCGGCuGUUUgu---UGUGGCGUGCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 47953 | 0.73 | 0.802503 |
Target: 5'- cGCGUCGucGCGGAUAACagACCGCcGCGCGGg -3' miRNA: 3'- -UGCGGC--UGUUUGUUG--UGGCG-UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 3346 | 0.73 | 0.802503 |
Target: 5'- uACaCCGACAGGC-ACACCGCAuCGUAa -3' miRNA: 3'- -UGcGGCUGUUUGuUGUGGCGU-GCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 1516 | 0.73 | 0.802503 |
Target: 5'- gACGCCG-CGGACuACGCUGCuuGCGCAc -3' miRNA: 3'- -UGCGGCuGUUUGuUGUGGCG--UGCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 194491 | 0.73 | 0.806016 |
Target: 5'- gGCGCCGGCGcccagcacgcccgaaAACAACGCCGU-CGCc- -3' miRNA: 3'- -UGCGGCUGU---------------UUGUUGUGGCGuGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 234429 | 0.73 | 0.806016 |
Target: 5'- gGCGCCGGCGcccagcacgcccgaaAACAACGCCGU-CGCc- -3' miRNA: 3'- -UGCGGCUGU---------------UUGUUGUGGCGuGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 44804 | 0.72 | 0.810374 |
Target: 5'- gGCGCCGGCGGACGugacucgGCAgCCGC-UGUAGa -3' miRNA: 3'- -UGCGGCUGUUUGU-------UGU-GGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 192039 | 0.72 | 0.81124 |
Target: 5'- uCGUgGACGAAUAGCagACCGCggGCGCAGu -3' miRNA: 3'- uGCGgCUGUUUGUUG--UGGCG--UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 118402 | 0.72 | 0.81124 |
Target: 5'- cGCGUCGACAGcagugcugccGCAGCGCUgccacuguGCACGUAGc -3' miRNA: 3'- -UGCGGCUGUU----------UGUUGUGG--------CGUGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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