miRNA display CGI


Results 61 - 80 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 234772 0.72 0.819819
Target:  5'- aGCGCCGugG-ACAGCaaGCCGCAgaaGCGGc -3'
miRNA:   3'- -UGCGGCugUuUGUUG--UGGCGUg--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 147638 0.72 0.819819
Target:  5'- aACGCCG-C-GACAACgGCCGC-CGCAGc -3'
miRNA:   3'- -UGCGGCuGuUUGUUG-UGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 194834 0.72 0.819819
Target:  5'- aGCGCCGugG-ACAGCaaGCCGCAgaaGCGGc -3'
miRNA:   3'- -UGCGGCugUuUGUUG--UGGCGUg--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 143506 0.72 0.819819
Target:  5'- gGCGCCugucuccugGGCGAGCAugGCGCCGCGCuGguGu -3'
miRNA:   3'- -UGCGG---------CUGUUUGU--UGUGGCGUG-CguC- -5'
29987 3' -53.6 NC_006273.1 + 228466 0.72 0.828231
Target:  5'- aACGUCGACGGGCucgGCgGCUGCACGCc- -3'
miRNA:   3'- -UGCGGCUGUUUGu--UG-UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 37999 0.72 0.828231
Target:  5'- cGCGCCc----ACAGCGCgGCGCGCGGg -3'
miRNA:   3'- -UGCGGcuguuUGUUGUGgCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 232892 0.72 0.828231
Target:  5'- cGCGCCc----ACAGCGCgGCGCGCGGg -3'
miRNA:   3'- -UGCGGcuguuUGUUGUGgCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196755 0.72 0.828231
Target:  5'- uGCGCCGGCAGACGAUAgucCUGCuCGgGGu -3'
miRNA:   3'- -UGCGGCUGUUUGUUGU---GGCGuGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 44691 0.72 0.828231
Target:  5'- cUGCUGugGcaaagaugaGACGACGCCGCugGUGGa -3'
miRNA:   3'- uGCGGCugU---------UUGUUGUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 233453 0.72 0.836469
Target:  5'- -aGCCaccgcGCGGGCAGCACCGCGCcCAGc -3'
miRNA:   3'- ugCGGc----UGUUUGUUGUGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 36329 0.72 0.836469
Target:  5'- uCGUCGAUGAGCAGCGCCaGCcccacGCGCAc -3'
miRNA:   3'- uGCGGCUGUUUGUUGUGG-CG-----UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 38560 0.72 0.836469
Target:  5'- -aGCCaccgcGCGGGCAGCACCGCGCcCAGc -3'
miRNA:   3'- ugCGGc----UGUUUGUUGUGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 197631 0.72 0.842928
Target:  5'- cGCGCCGACAGcuGCAGCACguggagaCGCugcgucgguuucuACGCGGc -3'
miRNA:   3'- -UGCGGCUGUU--UGUUGUG-------GCG-------------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 58639 0.72 0.844525
Target:  5'- gACGCCGACAu-UAGCGCguccaaGCGCGCGu -3'
miRNA:   3'- -UGCGGCUGUuuGUUGUGg-----CGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 194705 0.72 0.844525
Target:  5'- cACGCCG-CAAACGcgcugaggACGCCGaCGCGCu- -3'
miRNA:   3'- -UGCGGCuGUUUGU--------UGUGGC-GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 131665 0.72 0.844525
Target:  5'- gACGCUGAC--GCGGCGCCcgaaGCGCAGu -3'
miRNA:   3'- -UGCGGCUGuuUGUUGUGGcg--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 234643 0.72 0.844525
Target:  5'- cACGCCG-CAAACGcgcugaggACGCCGaCGCGCu- -3'
miRNA:   3'- -UGCGGCuGUUUGU--------UGUGGC-GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 147344 0.72 0.844525
Target:  5'- gACGCCGACGcccagcgauuAACgGACGCCGC-CGgGGg -3'
miRNA:   3'- -UGCGGCUGU----------UUG-UUGUGGCGuGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 153614 0.72 0.852392
Target:  5'- cCGCUGGCuGACAGCGCCGUuagccacgagACGCuGg -3'
miRNA:   3'- uGCGGCUGuUUGUUGUGGCG----------UGCGuC- -5'
29987 3' -53.6 NC_006273.1 + 233551 0.72 0.852392
Target:  5'- gGCGCCGACGcgAACGGCucguACUGCGC-CAGc -3'
miRNA:   3'- -UGCGGCUGU--UUGUUG----UGGCGUGcGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.