miRNA display CGI


Results 81 - 100 of 471 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 233551 0.72 0.852392
Target:  5'- gGCGCCGACGcgAACGGCucguACUGCGC-CAGc -3'
miRNA:   3'- -UGCGGCUGU--UUGUUG----UGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 153614 0.72 0.852392
Target:  5'- cCGCUGGCuGACAGCGCCGUuagccacgagACGCuGg -3'
miRNA:   3'- uGCGGCUGuUUGUUGUGGCG----------UGCGuC- -5'
29987 3' -53.6 NC_006273.1 + 165244 0.71 0.860064
Target:  5'- -gGCCGGCGAGCcauCGCCGCAcuCGCu- -3'
miRNA:   3'- ugCGGCUGUUUGuu-GUGGCGU--GCGuc -5'
29987 3' -53.6 NC_006273.1 + 90844 0.71 0.860064
Target:  5'- cGCGCCuccACAAA-AGCGCUGCGCGCAu -3'
miRNA:   3'- -UGCGGc--UGUUUgUUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 111856 0.71 0.860064
Target:  5'- gACGCCGACGAuCAgu-CCGUGCGguGg -3'
miRNA:   3'- -UGCGGCUGUUuGUuguGGCGUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 144343 0.71 0.860064
Target:  5'- gGCGuCCGA--GACGACugUGCACGUGGu -3'
miRNA:   3'- -UGC-GGCUguUUGUUGugGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 27151 0.71 0.866797
Target:  5'- gACGgUGACAGugGauccaugagagagGCGCCGCACGCu- -3'
miRNA:   3'- -UGCgGCUGUUugU-------------UGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 233375 0.71 0.866797
Target:  5'- cCGCCGGCGGccuccgucuccguGCcgcuCGCCGCugGCGGc -3'
miRNA:   3'- uGCGGCUGUU-------------UGuu--GUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38482 0.71 0.866797
Target:  5'- cCGCCGGCGGccuccgucuccguGCcgcuCGCCGCugGCGGc -3'
miRNA:   3'- uGCGGCUGUU-------------UGuu--GUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 219709 0.71 0.867534
Target:  5'- cACGgCGGCAAacaGCAGCAUCGCAaCGCc- -3'
miRNA:   3'- -UGCgGCUGUU---UGUUGUGGCGU-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 45440 0.71 0.867534
Target:  5'- cACGCCGgccgacgagcuGCAGACGGCugUGuCGCGCGu -3'
miRNA:   3'- -UGCGGC-----------UGUUUGUUGugGC-GUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 220152 0.71 0.867534
Target:  5'- gUGuuGGCAAc--GCGCCGCACGUAGu -3'
miRNA:   3'- uGCggCUGUUuguUGUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 164576 0.71 0.867534
Target:  5'- gGCGCCaGACGcAGCGACGuuGUcCGCGGa -3'
miRNA:   3'- -UGCGG-CUGU-UUGUUGUggCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 42754 0.71 0.867534
Target:  5'- aGCGaCGGCGAGCuACGCCGCGaguCGCAu -3'
miRNA:   3'- -UGCgGCUGUUUGuUGUGGCGU---GCGUc -5'
29987 3' -53.6 NC_006273.1 + 93311 0.71 0.867534
Target:  5'- -aGCCGugGuAACcguCGCCGCugGCGGc -3'
miRNA:   3'- ugCGGCugU-UUGuu-GUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 30452 0.71 0.870465
Target:  5'- cACGCCGGCGgaugaggaggcggagGACAGCGuuuuCacgaGCACGCGGg -3'
miRNA:   3'- -UGCGGCUGU---------------UUGUUGU----Gg---CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 123463 0.71 0.874798
Target:  5'- aGCGCCaGACAGucgugUAACGCCGUgugauGCGCGGc -3'
miRNA:   3'- -UGCGG-CUGUUu----GUUGUGGCG-----UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 40510 0.71 0.874798
Target:  5'- cUGCCgGACAGGCGAC-CCGgCGCGCu- -3'
miRNA:   3'- uGCGG-CUGUUUGUUGuGGC-GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 162913 0.71 0.874798
Target:  5'- aACGCCguGACGGACGugGCCGCcggcaccgACGguGc -3'
miRNA:   3'- -UGCGG--CUGUUUGUugUGGCG--------UGCguC- -5'
29987 3' -53.6 NC_006273.1 + 60038 0.71 0.874798
Target:  5'- cGCGCCGGCuccuguACGCCGCAaaaGCGa -3'
miRNA:   3'- -UGCGGCUGuuugu-UGUGGCGUg--CGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.