Results 1 - 20 of 471 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29987 | 3' | -53.6 | NC_006273.1 | + | 147266 | 0.66 | 0.990097 |
Target: 5'- uCGCUGAUGGACAAguuUGCCGCguuGCAGg -3' miRNA: 3'- uGCGGCUGUUUGUU---GUGGCGug-CGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 158368 | 0.66 | 0.990097 |
Target: 5'- uCGCgCGGCGuGCGcACGCCGCucACGCuAGa -3' miRNA: 3'- uGCG-GCUGUuUGU-UGUGGCG--UGCG-UC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 22248 | 0.66 | 0.990097 |
Target: 5'- uCGCCGACGGucACcAUcguGCCGCuccauCGCAGc -3' miRNA: 3'- uGCGGCUGUU--UGuUG---UGGCGu----GCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 200709 | 0.66 | 0.990097 |
Target: 5'- aACGCCGGCGcccaAACAUCccaaGCACGCc- -3' miRNA: 3'- -UGCGGCUGUuug-UUGUGG----CGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 189208 | 0.66 | 0.990097 |
Target: 5'- uCGUCGGC--GCGAUGCCGCAgGgCGGu -3' miRNA: 3'- uGCGGCUGuuUGUUGUGGCGUgC-GUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 2241 | 0.66 | 0.990097 |
Target: 5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3' miRNA: 3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 72984 | 0.66 | 0.990097 |
Target: 5'- cUGCCGACAcACca-GCCauuCGCGCAGg -3' miRNA: 3'- uGCGGCUGUuUGuugUGGc--GUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 204709 | 0.66 | 0.990097 |
Target: 5'- uCGCCGGCGAGCccCGagGCGCGCc- -3' miRNA: 3'- uGCGGCUGUUUGuuGUggCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 200956 | 0.66 | 0.990097 |
Target: 5'- cGCGCCGcCAAACG-CAUCGCucuggcCGUGGc -3' miRNA: 3'- -UGCGGCuGUUUGUuGUGGCGu-----GCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 72550 | 0.66 | 0.990097 |
Target: 5'- gUGCCGAC--GCAAgGCUGCGaugaggcccCGCAGc -3' miRNA: 3'- uGCGGCUGuuUGUUgUGGCGU---------GCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 156872 | 0.66 | 0.990097 |
Target: 5'- gGCGcCCGGugucCGGGCGGCGCCGCAgGg-- -3' miRNA: 3'- -UGC-GGCU----GUUUGUUGUGGCGUgCguc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 169823 | 0.66 | 0.990097 |
Target: 5'- -gGCCGGCAGGgcccCuuCGCCGCAgcUGUAGg -3' miRNA: 3'- ugCGGCUGUUU----GuuGUGGCGU--GCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 134101 | 0.66 | 0.990097 |
Target: 5'- gGCaCCGGCGGACAcaucaucauggGCACUGCGgGCu- -3' miRNA: 3'- -UGcGGCUGUUUGU-----------UGUGGCGUgCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 64195 | 0.66 | 0.990097 |
Target: 5'- gACGgaagCGACGAGCcuacugcaccGACAUCGCGCGCu- -3' miRNA: 3'- -UGCg---GCUGUUUG----------UUGUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 30592 | 0.66 | 0.990097 |
Target: 5'- uGCGCgaGACcGGCGGCACCG-GCGCc- -3' miRNA: 3'- -UGCGg-CUGuUUGUUGUGGCgUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 33732 | 0.66 | 0.990097 |
Target: 5'- cACGCCGuguACucguGACGuAUACUGgCGCGCAGc -3' miRNA: 3'- -UGCGGC---UGu---UUGU-UGUGGC-GUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 197134 | 0.66 | 0.990097 |
Target: 5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3' miRNA: 3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 179852 | 0.66 | 0.990097 |
Target: 5'- aGCGUCGACAGACggU-CCGUAgagggccaGCAGu -3' miRNA: 3'- -UGCGGCUGUUUGuuGuGGCGUg-------CGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 131858 | 0.66 | 0.98997 |
Target: 5'- -gGCCGGCuacGGCGGCcgcaucgACgGCACGCAc -3' miRNA: 3'- ugCGGCUGu--UUGUUG-------UGgCGUGCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 189962 | 0.66 | 0.98997 |
Target: 5'- -gGCCGGCGugGGCGGCucgcggagacuggGCUGCAgGCGGc -3' miRNA: 3'- ugCGGCUGU--UUGUUG-------------UGGCGUgCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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