miRNA display CGI


Results 21 - 40 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 114460 0.66 0.98997
Target:  5'- gGCGCCauGGCGAGCGccuccacuuccgcGgGCCGCaaACGCAa -3'
miRNA:   3'- -UGCGG--CUGUUUGU-------------UgUGGCG--UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 128964 0.66 0.989319
Target:  5'- gGCGUCGGCcGuguuuuugagcgcgcGCAGCACCGUGUGCAu -3'
miRNA:   3'- -UGCGGCUGuU---------------UGUUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 115388 0.66 0.988775
Target:  5'- gACGgUGACGgcauuaugagcGGCGGCGCUGUACgGCAGc -3'
miRNA:   3'- -UGCgGCUGU-----------UUGUUGUGGCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 197182 0.66 0.988775
Target:  5'- cCGCCGuCuccgGAugAGCgGCCGCgGCGCGGg -3'
miRNA:   3'- uGCGGCuG----UUugUUG-UGGCG-UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 115972 0.66 0.988775
Target:  5'- gGCGCUGGCugAGACGG-GCgGCGCGCGu -3'
miRNA:   3'- -UGCGGCUG--UUUGUUgUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 61265 0.66 0.988775
Target:  5'- -aGCC-ACu-GCAGCGCgGCGCGCGc -3'
miRNA:   3'- ugCGGcUGuuUGUUGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 68149 0.66 0.988775
Target:  5'- uGCGCCagGAUcccggGAGCAGCuCCGuCACGCGu -3'
miRNA:   3'- -UGCGG--CUG-----UUUGUUGuGGC-GUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 161625 0.66 0.988775
Target:  5'- uCGCCG-CuGGCGGCGCCGCuGC-CGGg -3'
miRNA:   3'- uGCGGCuGuUUGUUGUGGCG-UGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 108526 0.66 0.988775
Target:  5'- uCGCCaccGACGcACAuACGCCGCugcUGCAGg -3'
miRNA:   3'- uGCGG---CUGUuUGU-UGUGGCGu--GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 6258 0.66 0.988775
Target:  5'- uCGCCGGCGgcgaAACAAcCAgCGCcggguacugugGCGCAGu -3'
miRNA:   3'- uGCGGCUGU----UUGUU-GUgGCG-----------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 154698 0.66 0.988775
Target:  5'- -aGCCGugAGACGcugcuCACCuuGCGCAu -3'
miRNA:   3'- ugCGGCugUUUGUu----GUGGcgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 23120 0.66 0.988775
Target:  5'- -aGuaGACAGACAgaACACCGCAacuCGguGu -3'
miRNA:   3'- ugCggCUGUUUGU--UGUGGCGU---GCguC- -5'
29987 3' -53.6 NC_006273.1 + 119163 0.66 0.988775
Target:  5'- uGCuCCGugGAAaGAgACCgGCGCGCAGc -3'
miRNA:   3'- -UGcGGCugUUUgUUgUGG-CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 44913 0.66 0.988775
Target:  5'- cGCGCC-----ACAACGCCGUccgGCGCAa -3'
miRNA:   3'- -UGCGGcuguuUGUUGUGGCG---UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 142054 0.66 0.988775
Target:  5'- cACGUCGuCucgcGGCAGCGCCGC-CaGCGGc -3'
miRNA:   3'- -UGCGGCuGu---UUGUUGUGGCGuG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 177154 0.66 0.988636
Target:  5'- gACGCCGuCAGugugggcuucgcGCGGCACCGUguucgaggaggagACGguGu -3'
miRNA:   3'- -UGCGGCuGUU------------UGUUGUGGCG-------------UGCguC- -5'
29987 3' -53.6 NC_006273.1 + 124414 0.66 0.988636
Target:  5'- uCGUCGuCGGGCGACACgUGCugcggccGCGCGGg -3'
miRNA:   3'- uGCGGCuGUUUGUUGUG-GCG-------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 193803 0.66 0.987919
Target:  5'- -aGCCGAgGAggcuauggcgcggcgGCGACAgCGCAUGCu- -3'
miRNA:   3'- ugCGGCUgUU---------------UGUUGUgGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 201391 0.66 0.987919
Target:  5'- cACGCCGagcugaggcuggagcGCAAuCGACACCuGgGCGCGu -3'
miRNA:   3'- -UGCGGC---------------UGUUuGUUGUGG-CgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 39524 0.66 0.987321
Target:  5'- cGCGUCucgGACAAgaucacggcgcGCAACauGCCGCGCGCc- -3'
miRNA:   3'- -UGCGG---CUGUU-----------UGUUG--UGGCGUGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.