miRNA display CGI


Results 41 - 60 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 86003 0.66 0.987321
Target:  5'- uCGCCccaGACcAACAgcACGCCGgGCGCGc -3'
miRNA:   3'- uGCGG---CUGuUUGU--UGUGGCgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 15430 0.66 0.987321
Target:  5'- uGC-CCGAUGAGCGACGCgaGCGCgaGCGGc -3'
miRNA:   3'- -UGcGGCUGUUUGUUGUGg-CGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 194634 0.66 0.987321
Target:  5'- gGCGCUGguccGCGAAaaaaAACACCGCgggacgccACGCAa -3'
miRNA:   3'- -UGCGGC----UGUUUg---UUGUGGCG--------UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 150755 0.66 0.987321
Target:  5'- cGCGCUG-CAGAuCAGcCGCCGgGCGCu- -3'
miRNA:   3'- -UGCGGCuGUUU-GUU-GUGGCgUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 49947 0.66 0.987321
Target:  5'- cCGCCGGCGAcGCGAgAguucCUGCGCGguGc -3'
miRNA:   3'- uGCGGCUGUU-UGUUgU----GGCGUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 109239 0.66 0.987321
Target:  5'- uGCGaaCCGAC-AugGGCGuCCGCGUGCAGg -3'
miRNA:   3'- -UGC--GGCUGuUugUUGU-GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 93105 0.66 0.987321
Target:  5'- cACGCCGccCAcACGACGuCgGCACaGCGGg -3'
miRNA:   3'- -UGCGGCu-GUuUGUUGU-GgCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 234572 0.66 0.987321
Target:  5'- gGCGCUGguccGCGAAaaaaAACACCGCgggacgccACGCAa -3'
miRNA:   3'- -UGCGGC----UGUUUg---UUGUGGCG--------UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 99993 0.66 0.987321
Target:  5'- uGCGUgCGA-AAGCAGCGCgUGCACGCGu -3'
miRNA:   3'- -UGCG-GCUgUUUGUUGUG-GCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 129535 0.66 0.987321
Target:  5'- -gGCCGGC--GCuGCGCCGCGcCGCc- -3'
miRNA:   3'- ugCGGCUGuuUGuUGUGGCGU-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 104587 0.66 0.987321
Target:  5'- cGCGCCGGC--ACGAUGCaGCugGCc- -3'
miRNA:   3'- -UGCGGCUGuuUGUUGUGgCGugCGuc -5'
29987 3' -53.6 NC_006273.1 + 215575 0.66 0.987321
Target:  5'- -aGCCGGugcGGCAACACCaGCcagcaaaagGCGCAGa -3'
miRNA:   3'- ugCGGCUgu-UUGUUGUGG-CG---------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 144107 0.66 0.987321
Target:  5'- cGCGCUGGCucGCGACGaggguCUGCGCGaCAu -3'
miRNA:   3'- -UGCGGCUGuuUGUUGU-----GGCGUGC-GUc -5'
29987 3' -53.6 NC_006273.1 + 57410 0.66 0.987321
Target:  5'- -gGCCGACAGGucCGAgAugucCUGCACGUAGa -3'
miRNA:   3'- ugCGGCUGUUU--GUUgU----GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 39524 0.66 0.987321
Target:  5'- cGCGUCucgGACAAgaucacggcgcGCAACauGCCGCGCGCc- -3'
miRNA:   3'- -UGCGG---CUGUU-----------UGUUG--UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 77693 0.66 0.987321
Target:  5'- aGCGUC-ACGcuCAACAUCGUGCGCGa -3'
miRNA:   3'- -UGCGGcUGUuuGUUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 42443 0.66 0.987321
Target:  5'- uGCGCCGACu-GCGGgaaGCUGUccACGUAGa -3'
miRNA:   3'- -UGCGGCUGuuUGUUg--UGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 128099 0.66 0.987321
Target:  5'- gGCGCgGGCucguGCAGCACCgggugGCACaGCGu -3'
miRNA:   3'- -UGCGgCUGuu--UGUUGUGG-----CGUG-CGUc -5'
29987 3' -53.6 NC_006273.1 + 123734 0.66 0.987321
Target:  5'- aGCGCC-ACAAACGAgGgaagacCCGCA-GCAGg -3'
miRNA:   3'- -UGCGGcUGUUUGUUgU------GGCGUgCGUC- -5'
29987 3' -53.6 NC_006273.1 + 195846 0.66 0.987167
Target:  5'- gGCGCgCGGCAuguuGC-GCGCCGUgaucuuguccgagACGCGGu -3'
miRNA:   3'- -UGCG-GCUGUu---UGuUGUGGCG-------------UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.