miRNA display CGI


Results 61 - 80 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 195846 0.66 0.987167
Target:  5'- gGCGCgCGGCAuguuGC-GCGCCGUgaucuuguccgagACGCGGu -3'
miRNA:   3'- -UGCG-GCUGUu---UGuUGUGGCG-------------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 198803 0.66 0.986857
Target:  5'- gGC-CCGAgAAGCAuucccuagugcugcGCACgGCGCGCGa -3'
miRNA:   3'- -UGcGGCUgUUUGU--------------UGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 130205 0.66 0.986381
Target:  5'- cCGCCGucuccggcuaccuggGCGAggccGCGGCGCCGCGCaucCAGg -3'
miRNA:   3'- uGCGGC---------------UGUU----UGUUGUGGCGUGc--GUC- -5'
29987 3' -53.6 NC_006273.1 + 71095 0.66 0.985725
Target:  5'- gGCGCCGACGcGC-ACACCuGCGaGUAc -3'
miRNA:   3'- -UGCGGCUGUuUGuUGUGG-CGUgCGUc -5'
29987 3' -53.6 NC_006273.1 + 234956 0.66 0.985725
Target:  5'- gACGgCGAauaaAAGCGACguGCgGCGCGCAc -3'
miRNA:   3'- -UGCgGCUg---UUUGUUG--UGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 85709 0.66 0.985725
Target:  5'- -gGCCGcGCAgcAACAgccaccuaACGCCGCGgGCGGc -3'
miRNA:   3'- ugCGGC-UGU--UUGU--------UGUGGCGUgCGUC- -5'
29987 3' -53.6 NC_006273.1 + 64234 0.66 0.985725
Target:  5'- aGCGCCGAUGAccuGGC-CCGCGgGCAc -3'
miRNA:   3'- -UGCGGCUGUUug-UUGuGGCGUgCGUc -5'
29987 3' -53.6 NC_006273.1 + 173115 0.66 0.985725
Target:  5'- cGCGCCGA--AACAACACguagggcaugaGCGUGCAGg -3'
miRNA:   3'- -UGCGGCUguUUGUUGUGg----------CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 123418 0.66 0.985725
Target:  5'- uACGCUccaGACuuGACcgcCACCGCGCgGCAGa -3'
miRNA:   3'- -UGCGG---CUGu-UUGuu-GUGGCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 40063 0.66 0.985725
Target:  5'- gACGgCGAauaaAAGCGACguGCgGCGCGCAc -3'
miRNA:   3'- -UGCgGCUg---UUUGUUG--UGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 216330 0.66 0.985725
Target:  5'- aGCGCCGGCAGcguuuCGACGCUGUGagaGgGGa -3'
miRNA:   3'- -UGCGGCUGUUu----GUUGUGGCGUg--CgUC- -5'
29987 3' -53.6 NC_006273.1 + 189366 0.66 0.985725
Target:  5'- uUGCuCGugAGGCGGCACgCGUGUGCGGg -3'
miRNA:   3'- uGCG-GCugUUUGUUGUG-GCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 40233 0.66 0.985725
Target:  5'- cAUGCCGGCAGA--AC-CCGguUGCGGc -3'
miRNA:   3'- -UGCGGCUGUUUguUGuGGCguGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 125 0.66 0.985725
Target:  5'- gACGgCGAauaaAAGCGACguGCgGCGCGCAc -3'
miRNA:   3'- -UGCgGCUg---UUUGUUG--UGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 213325 0.66 0.985725
Target:  5'- gACGCCGguACGAuucGgAACACCaguaGCACaGCAGg -3'
miRNA:   3'- -UGCGGC--UGUU---UgUUGUGG----CGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 47844 0.66 0.985725
Target:  5'- uCGCUGGgccuCGGCGCCGUACgGCGGg -3'
miRNA:   3'- uGCGGCUguuuGUUGUGGCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 39578 0.66 0.985725
Target:  5'- cUGCUGACGAGC-GCGCa--GCGCGGg -3'
miRNA:   3'- uGCGGCUGUUUGuUGUGgcgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 96222 0.66 0.985725
Target:  5'- uUGuuGACAAGCGAUggaggACCGCACcCAa -3'
miRNA:   3'- uGCggCUGUUUGUUG-----UGGCGUGcGUc -5'
29987 3' -53.6 NC_006273.1 + 42250 0.66 0.98398
Target:  5'- -gGCCGcACAcgugucGACGACACCGC-CGUc- -3'
miRNA:   3'- ugCGGC-UGU------UUGUUGUGGCGuGCGuc -5'
29987 3' -53.6 NC_006273.1 + 187770 0.66 0.98398
Target:  5'- uACGUCGACGcagguAGCGGCuggguuGCUcggGCACGCGGa -3'
miRNA:   3'- -UGCGGCUGU-----UUGUUG------UGG---CGUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.