miRNA display CGI


Results 81 - 100 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 124393 0.66 0.98398
Target:  5'- aGCGCCGACA------GCCGCGCGa-- -3'
miRNA:   3'- -UGCGGCUGUuuguugUGGCGUGCguc -5'
29987 3' -53.6 NC_006273.1 + 34603 0.66 0.98398
Target:  5'- gAUGUCGuACuuGCcguGCGCCGUAgCGCAGg -3'
miRNA:   3'- -UGCGGC-UGuuUGu--UGUGGCGU-GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 72643 0.66 0.98398
Target:  5'- aGCGCgGGCGucgaAGCGCUugGCGCGUAGu -3'
miRNA:   3'- -UGCGgCUGUuug-UUGUGG--CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38134 0.66 0.98398
Target:  5'- cGCGCUcgGGCcGGCGAgGCCG-ACGCGGu -3'
miRNA:   3'- -UGCGG--CUGuUUGUUgUGGCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 81198 0.66 0.98398
Target:  5'- uUGCUGAUAGACAcACACUGCAaauCGGg -3'
miRNA:   3'- uGCGGCUGUUUGU-UGUGGCGUgc-GUC- -5'
29987 3' -53.6 NC_006273.1 + 38534 0.66 0.98398
Target:  5'- gACGaggaCGACGGGCAcCACCGCGgucaaaagguCGCAc -3'
miRNA:   3'- -UGCg---GCUGUUUGUuGUGGCGU----------GCGUc -5'
29987 3' -53.6 NC_006273.1 + 197038 0.66 0.98398
Target:  5'- -aGCUGACGAGCGGCAgCgGCgACGaCGGu -3'
miRNA:   3'- ugCGGCUGUUUGUUGU-GgCG-UGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 117191 0.66 0.98398
Target:  5'- cCGCCGAgcguuCGGGCGACAgCCGCAguCAGg -3'
miRNA:   3'- uGCGGCU-----GUUUGUUGU-GGCGUgcGUC- -5'
29987 3' -53.6 NC_006273.1 + 130199 0.66 0.98398
Target:  5'- -gGCCGACAcGGCGGCgACCGUuuccccguccuCGCGGa -3'
miRNA:   3'- ugCGGCUGU-UUGUUG-UGGCGu----------GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 111377 0.66 0.98398
Target:  5'- aACGCCgGACGAGCugGACAa-GCACaGCGGc -3'
miRNA:   3'- -UGCGG-CUGUUUG--UUGUggCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 42250 0.66 0.98398
Target:  5'- -gGCCGcACAcgugucGACGACACCGC-CGUc- -3'
miRNA:   3'- ugCGGC-UGU------UUGUUGUGGCGuGCGuc -5'
29987 3' -53.6 NC_006273.1 + 109381 0.66 0.98398
Target:  5'- cAUGCUGACGuucGGCAGCAuguCCGaGCGCAa -3'
miRNA:   3'- -UGCGGCUGU---UUGUUGU---GGCgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 118209 0.66 0.98398
Target:  5'- aACGCuCGGCGGACGcCGCuuuaauaaCGCACGCc- -3'
miRNA:   3'- -UGCG-GCUGUUUGUuGUG--------GCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 187770 0.66 0.98398
Target:  5'- uACGUCGACGcagguAGCGGCuggguuGCUcggGCACGCGGa -3'
miRNA:   3'- -UGCGGCUGU-----UUGUUG------UGG---CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 163030 0.66 0.98398
Target:  5'- gGCGCCgGACAGcaGGCGCauCACGUAGa -3'
miRNA:   3'- -UGCGG-CUGUUugUUGUGgcGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 177927 0.66 0.983797
Target:  5'- gGCGCacaGACAaacaGACAGCcacacccgacacaGCCGCAuguUGCAGa -3'
miRNA:   3'- -UGCGg--CUGU----UUGUUG-------------UGGCGU---GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 55954 0.66 0.983797
Target:  5'- -aGCUGAgAcGCAGCACCGUgccgcugACGCGa -3'
miRNA:   3'- ugCGGCUgUuUGUUGUGGCG-------UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 120232 0.66 0.983426
Target:  5'- -aGCCGaagcaccuggcaguGCAGGCGACcaaagcuuCCGCugGCGGc -3'
miRNA:   3'- ugCGGC--------------UGUUUGUUGu-------GGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 2406 0.66 0.982078
Target:  5'- gGCGCCcGCcgcCGAgGCCGCGCGgCGGc -3'
miRNA:   3'- -UGCGGcUGuuuGUUgUGGCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 173911 0.66 0.982078
Target:  5'- cACGCCGAucacCAGGCGcuCACgGCGCGUu- -3'
miRNA:   3'- -UGCGGCU----GUUUGUu-GUGgCGUGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.