miRNA display CGI


Results 101 - 120 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 155190 0.66 0.982078
Target:  5'- gACGCCGAacucauGGAUcACACCagucuGUACGCGGa -3'
miRNA:   3'- -UGCGGCUg-----UUUGuUGUGG-----CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 92178 0.66 0.982078
Target:  5'- aACGUCGuACAAGCuACAcaccccaaaaacCCGCGCGCc- -3'
miRNA:   3'- -UGCGGC-UGUUUGuUGU------------GGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 22740 0.66 0.982078
Target:  5'- uCGCCGAgGuACggUACCGCugGgAu -3'
miRNA:   3'- uGCGGCUgUuUGuuGUGGCGugCgUc -5'
29987 3' -53.6 NC_006273.1 + 168093 0.66 0.982078
Target:  5'- cCGCCGGC-----GCGCCaGCAUGUAGg -3'
miRNA:   3'- uGCGGCUGuuuguUGUGG-CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 197299 0.66 0.982078
Target:  5'- gGCGCCcGCcgcCGAgGCCGCGCGgCGGc -3'
miRNA:   3'- -UGCGGcUGuuuGUUgUGGCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 203724 0.66 0.982078
Target:  5'- cACGCCGuCcuuGACGACGCaGCugGCc- -3'
miRNA:   3'- -UGCGGCuGu--UUGUUGUGgCGugCGuc -5'
29987 3' -53.6 NC_006273.1 + 136101 0.66 0.982078
Target:  5'- gACGCCGugGgcGGCGAUcgcgcuuuugACCGCGaGCGGc -3'
miRNA:   3'- -UGCGGCugU--UUGUUG----------UGGCGUgCGUC- -5'
29987 3' -53.6 NC_006273.1 + 21930 0.66 0.981878
Target:  5'- cCGCCGGCAucggguaGACGGCGCUaGCgGCGCu- -3'
miRNA:   3'- uGCGGCUGU-------UUGUUGUGG-CG-UGCGuc -5'
29987 3' -53.6 NC_006273.1 + 202743 0.67 0.980858
Target:  5'- gACGCCGACGgccaggucauccgugAGuCGGCcugcuacgugaGCCGCGCGCu- -3'
miRNA:   3'- -UGCGGCUGU---------------UU-GUUG-----------UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 203730 0.67 0.980011
Target:  5'- gUGCUGGagauAGCAGCGCaGCACGCGa -3'
miRNA:   3'- uGCGGCUgu--UUGUUGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 86082 0.67 0.980011
Target:  5'- uGCGCCaauaACAGuCGACcacaguCCGCACGCAc -3'
miRNA:   3'- -UGCGGc---UGUUuGUUGu-----GGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 197065 0.67 0.980011
Target:  5'- gGCGgCGGCAGcggcagcagcgGCGGCGCCG-ACGguGa -3'
miRNA:   3'- -UGCgGCUGUU-----------UGUUGUGGCgUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 202623 0.67 0.980011
Target:  5'- cGCGCCG-CcGACu-CGCUGC-CGCAGu -3'
miRNA:   3'- -UGCGGCuGuUUGuuGUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 87191 0.67 0.980011
Target:  5'- cGCGUuccgCGGCAuGCGugACCaCACGCGGc -3'
miRNA:   3'- -UGCG----GCUGUuUGUugUGGcGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 33330 0.67 0.980011
Target:  5'- aGCGCCGAgCugaacuGCGGCAgCCGCGUGCGa -3'
miRNA:   3'- -UGCGGCU-Guu----UGUUGU-GGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 197736 0.67 0.980011
Target:  5'- cGCGCCGuC-AACAGCgugccuuuuGCCGCGCGgGu -3'
miRNA:   3'- -UGCGGCuGuUUGUUG---------UGGCGUGCgUc -5'
29987 3' -53.6 NC_006273.1 + 48642 0.67 0.980011
Target:  5'- aACGCCGuCGGcGCAcGCAgCGguCGCAGg -3'
miRNA:   3'- -UGCGGCuGUU-UGU-UGUgGCguGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 200616 0.67 0.980011
Target:  5'- gACGCCGAUucguaaucGACAggagGCugUGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGu-------UUGU----UGugGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 157182 0.67 0.980011
Target:  5'- --cCCGGC-GGCGAaACCGCGCGCAa -3'
miRNA:   3'- ugcGGCUGuUUGUUgUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 164723 0.67 0.980011
Target:  5'- cCGCCGcCAccgugucgcgcAGCAGCACCGUGuCGUGGu -3'
miRNA:   3'- uGCGGCuGU-----------UUGUUGUGGCGU-GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.