miRNA display CGI


Results 1 - 20 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 125 0.66 0.985725
Target:  5'- gACGgCGAauaaAAGCGACguGCgGCGCGCAc -3'
miRNA:   3'- -UGCgGCUg---UUUGUUG--UGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 361 0.69 0.92494
Target:  5'- cCGCCGACAcaccCGGCACaCGCcCGCGa -3'
miRNA:   3'- uGCGGCUGUuu--GUUGUG-GCGuGCGUc -5'
29987 3' -53.6 NC_006273.1 + 592 0.7 0.901685
Target:  5'- gGCGCCG-CAAGCGcucCGCCGCuucUGCGGc -3'
miRNA:   3'- -UGCGGCuGUUUGUu--GUGGCGu--GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 1177 0.67 0.97109
Target:  5'- gGCGCUGACGGAgcuggaauaccaggcCAuggGCGCCGUguggcGCGCGGc -3'
miRNA:   3'- -UGCGGCUGUUU---------------GU---UGUGGCG-----UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 1480 1.09 0.007554
Target:  5'- cACGCCGACAAACAACACCGCACGCAGa -3'
miRNA:   3'- -UGCGGCUGUUUGUUGUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 1516 0.73 0.802503
Target:  5'- gACGCCG-CGGACuACGCUGCuuGCGCAc -3'
miRNA:   3'- -UGCGGCuGUUUGuUGUGGCG--UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 1558 0.69 0.944465
Target:  5'- cACGCUGAUccuAGCGGCGCgCG-ACGCGGa -3'
miRNA:   3'- -UGCGGCUGu--UUGUUGUG-GCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 1684 0.73 0.793614
Target:  5'- gGCGCucCGACAGACGuuGCUGCGCGCc- -3'
miRNA:   3'- -UGCG--GCUGUUUGUugUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 1740 0.75 0.708248
Target:  5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3'
miRNA:   3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 1850 0.68 0.952844
Target:  5'- uCGCUGACugGAACGucguACGCUGC-CGCGGa -3'
miRNA:   3'- uGCGGCUG--UUUGU----UGUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 1974 0.67 0.969946
Target:  5'- -gGCCGGCGacgggGACGACGUCGCGCcaGCGGc -3'
miRNA:   3'- ugCGGCUGU-----UUGUUGUGGCGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 2027 0.76 0.62785
Target:  5'- cCGCCGGCGggGAC-GCGCCGUGCGCGa -3'
miRNA:   3'- uGCGGCUGU--UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 2104 0.71 0.877644
Target:  5'- gGCGCCGGCGggAGCGcgauuugcgugccaaACGCggacgCGCACGCGGu -3'
miRNA:   3'- -UGCGGCUGU--UUGU---------------UGUG-----GCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 2172 0.67 0.980011
Target:  5'- gGCGgCGGCAGcggcagcagcgGCGGCGCCG-ACGguGa -3'
miRNA:   3'- -UGCgGCUGUU-----------UGUUGUGGCgUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 2193 0.68 0.960327
Target:  5'- cACGCCGA--AACGAC-CCGCACaugGCGc -3'
miRNA:   3'- -UGCGGCUguUUGUUGuGGCGUG---CGUc -5'
29987 3' -53.6 NC_006273.1 + 2241 0.66 0.990097
Target:  5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3'
miRNA:   3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 2314 0.68 0.966947
Target:  5'- cCGCUgGACGGGCAcguguAC-CCGCugGCGGc -3'
miRNA:   3'- uGCGG-CUGUUUGU-----UGuGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 2406 0.66 0.982078
Target:  5'- gGCGCCcGCcgcCGAgGCCGCGCGgCGGc -3'
miRNA:   3'- -UGCGGcUGuuuGUUgUGGCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 2505 0.67 0.975352
Target:  5'- cGCGCUGugGGcgcGCGA-GCCGCACggGCAGu -3'
miRNA:   3'- -UGCGGCugUU---UGUUgUGGCGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 3346 0.73 0.802503
Target:  5'- uACaCCGACAGGC-ACACCGCAuCGUAa -3'
miRNA:   3'- -UGcGGCUGUUUGuUGUGGCGU-GCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.