miRNA display CGI


Results 41 - 60 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 27017 0.7 0.907846
Target:  5'- aGCcuCCGACGAGCu-CGCgGCGCGUAGa -3'
miRNA:   3'- -UGc-GGCUGUUUGuuGUGgCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 27151 0.71 0.866797
Target:  5'- gACGgUGACAGugGauccaugagagagGCGCCGCACGCu- -3'
miRNA:   3'- -UGCgGCUGUUugU-------------UGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 27396 0.71 0.881849
Target:  5'- gACGCCGACAAGaccuCAGCAUgGCuCGgAGg -3'
miRNA:   3'- -UGCGGCUGUUU----GUUGUGgCGuGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 30452 0.71 0.870465
Target:  5'- cACGCCGGCGgaugaggaggcggagGACAGCGuuuuCacgaGCACGCGGg -3'
miRNA:   3'- -UGCGGCUGU---------------UUGUUGU----Gg---CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 30592 0.66 0.990097
Target:  5'- uGCGCgaGACcGGCGGCACCG-GCGCc- -3'
miRNA:   3'- -UGCGg-CUGuUUGUUGUGGCgUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 30652 0.67 0.977771
Target:  5'- cGCGUCGGCAAccGCAgaucGCAgCGgGCGCGc -3'
miRNA:   3'- -UGCGGCUGUU--UGU----UGUgGCgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 31120 0.71 0.88801
Target:  5'- aGCGCCuGGCGAGCGcgaucucACGCgucggauaaucaCGCACGCGGu -3'
miRNA:   3'- -UGCGG-CUGUUUGU-------UGUG------------GCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 32978 0.7 0.918915
Target:  5'- uCGCaGACAAACAACguguaGCCGCGCggauaggGCAGa -3'
miRNA:   3'- uGCGgCUGUUUGUUG-----UGGCGUG-------CGUC- -5'
29987 3' -53.6 NC_006273.1 + 33330 0.67 0.980011
Target:  5'- aGCGCCGAgCugaacuGCGGCAgCCGCGUGCGa -3'
miRNA:   3'- -UGCGGCU-Guu----UGUUGU-GGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 33426 0.69 0.935168
Target:  5'- gGCGUCGGCGgcgcgcGACAGCcCCG-GCGCAGc -3'
miRNA:   3'- -UGCGGCUGU------UUGUUGuGGCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 33732 0.66 0.990097
Target:  5'- cACGCCGuguACucguGACGuAUACUGgCGCGCAGc -3'
miRNA:   3'- -UGCGGC---UGu---UUGU-UGUGGC-GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 34137 0.67 0.975352
Target:  5'- uCGCCGACAAGcCGGC-CCGUuguguAUGCAu -3'
miRNA:   3'- uGCGGCUGUUU-GUUGuGGCG-----UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 34248 0.73 0.783672
Target:  5'- cCGCCGGCAGGCAGCgGCCGaugaguuCGCGCu- -3'
miRNA:   3'- uGCGGCUGUUUGUUG-UGGC-------GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 34603 0.66 0.98398
Target:  5'- gAUGUCGuACuuGCcguGCGCCGUAgCGCAGg -3'
miRNA:   3'- -UGCGGC-UGuuUGu--UGUGGCGU-GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 35197 0.67 0.977771
Target:  5'- aACGgCGAgAAGCAaaaACGCCGUggGCAa -3'
miRNA:   3'- -UGCgGCUgUUUGU---UGUGGCGugCGUc -5'
29987 3' -53.6 NC_006273.1 + 36329 0.72 0.836469
Target:  5'- uCGUCGAUGAGCAGCGCCaGCcccacGCGCAc -3'
miRNA:   3'- uGCGGCUGUUUGUUGUGG-CG-----UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 36434 0.73 0.775418
Target:  5'- uCGCCG-CAGAgAAU-CCGCACGCGGu -3'
miRNA:   3'- uGCGGCuGUUUgUUGuGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 36553 0.7 0.913776
Target:  5'- -gGCCGAgagcccCAGAUcgcGCGCCGUGCGCAGc -3'
miRNA:   3'- ugCGGCU------GUUUGu--UGUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 36895 0.77 0.557485
Target:  5'- cGCGUCGuagGCGAACAcgGCGCCGUACGCGu -3'
miRNA:   3'- -UGCGGC---UGUUUGU--UGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 37115 0.75 0.66828
Target:  5'- aGCGCCG-CAAGUAACGCCGCAgGCc- -3'
miRNA:   3'- -UGCGGCuGUUUGUUGUGGCGUgCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.