miRNA display CGI


Results 61 - 80 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 37999 0.72 0.828231
Target:  5'- cGCGCCc----ACAGCGCgGCGCGCGGg -3'
miRNA:   3'- -UGCGGcuguuUGUUGUGgCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38107 0.75 0.678336
Target:  5'- gGCGCCGACucgcgcccCAGCGCCaGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGuuu-----GUUGUGG-CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 38134 0.66 0.98398
Target:  5'- cGCGCUcgGGCcGGCGAgGCCG-ACGCGGu -3'
miRNA:   3'- -UGCGG--CUGuUUGUUgUGGCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38482 0.71 0.866797
Target:  5'- cCGCCGGCGGccuccgucuccguGCcgcuCGCCGCugGCGGc -3'
miRNA:   3'- uGCGGCUGUU-------------UGuu--GUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38534 0.66 0.98398
Target:  5'- gACGaggaCGACGGGCAcCACCGCGgucaaaagguCGCAc -3'
miRNA:   3'- -UGCg---GCUGUUUGUuGUGGCGU----------GCGUc -5'
29987 3' -53.6 NC_006273.1 + 38560 0.72 0.836469
Target:  5'- -aGCCaccgcGCGGGCAGCACCGCGCcCAGc -3'
miRNA:   3'- ugCGGc----UGUUUGUUGUGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 38659 0.72 0.852392
Target:  5'- gGCGCCGACGcgAACGGCucguACUGCGC-CAGc -3'
miRNA:   3'- -UGCGGCUGU--UUGUUG----UGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 38769 0.68 0.963743
Target:  5'- cCGCCGGCGcAGCucccguccgAGCGCCGUcgccuccucggcGCGCAGc -3'
miRNA:   3'- uGCGGCUGU-UUG---------UUGUGGCG------------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38830 0.83 0.280226
Target:  5'- aGCGCCGGCugAGGCAGCAgcgUCGCGCGCGGg -3'
miRNA:   3'- -UGCGGCUG--UUUGUUGU---GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 39161 0.68 0.966947
Target:  5'- cACGCCGuucaucugGCugcGCGGCGucacCCGCGCGUAGa -3'
miRNA:   3'- -UGCGGC--------UGuu-UGUUGU----GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 39455 0.74 0.737592
Target:  5'- gACGCCGugGcccGGCGuCGCCGUagGCGCAGc -3'
miRNA:   3'- -UGCGGCugU---UUGUuGUGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 39524 0.66 0.987321
Target:  5'- cGCGUCucgGACAAgaucacggcgcGCAACauGCCGCGCGCc- -3'
miRNA:   3'- -UGCGG---CUGUU-----------UGUUG--UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 39578 0.66 0.985725
Target:  5'- cUGCUGACGAGC-GCGCa--GCGCGGg -3'
miRNA:   3'- uGCGGCUGUUUGuUGUGgcgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 40063 0.66 0.985725
Target:  5'- gACGgCGAauaaAAGCGACguGCgGCGCGCAc -3'
miRNA:   3'- -UGCgGCUg---UUUGUUG--UGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 40233 0.66 0.985725
Target:  5'- cAUGCCGGCAGA--AC-CCGguUGCGGc -3'
miRNA:   3'- -UGCGGCUGUUUguUGuGGCguGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 40299 0.69 0.92494
Target:  5'- cCGCCGACAcaccCGGCACaCGCcCGCGa -3'
miRNA:   3'- uGCGGCUGUuu--GUUGUG-GCGuGCGUc -5'
29987 3' -53.6 NC_006273.1 + 40510 0.71 0.874798
Target:  5'- cUGCCgGACAGGCGAC-CCGgCGCGCu- -3'
miRNA:   3'- uGCGG-CUGUUUGUUGuGGC-GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 40530 0.7 0.901685
Target:  5'- gGCGCCG-CAAGCGcucCGCCGCuucUGCGGc -3'
miRNA:   3'- -UGCGGCuGUUUGUu--GUGGCGu--GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 41508 0.74 0.736625
Target:  5'- gGCGUCGGCGugaggauGGCAGCGCCgGCGCcaGCAGg -3'
miRNA:   3'- -UGCGGCUGU-------UUGUUGUGG-CGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 42250 0.66 0.98398
Target:  5'- -gGCCGcACAcgugucGACGACACCGC-CGUc- -3'
miRNA:   3'- ugCGGC-UGU------UUGUUGUGGCGuGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.