miRNA display CGI


Results 81 - 100 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 42443 0.66 0.987321
Target:  5'- uGCGCCGACu-GCGGgaaGCUGUccACGUAGa -3'
miRNA:   3'- -UGCGGCUGuuUGUUg--UGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 42754 0.71 0.867534
Target:  5'- aGCGaCGGCGAGCuACGCCGCGaguCGCAu -3'
miRNA:   3'- -UGCgGCUGUUUGuUGUGGCGU---GCGUc -5'
29987 3' -53.6 NC_006273.1 + 43135 0.73 0.784583
Target:  5'- -aGCuCGuuGAACAGCACCGUACGCc- -3'
miRNA:   3'- ugCG-GCugUUUGUUGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 43579 0.69 0.92494
Target:  5'- aGCGCCG-UAGGCAAgUGCCGCgGCGCGu -3'
miRNA:   3'- -UGCGGCuGUUUGUU-GUGGCG-UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 43877 0.69 0.92494
Target:  5'- aACGCUGAUAGGCGAgACaaCGCACGaAGg -3'
miRNA:   3'- -UGCGGCUGUUUGUUgUG--GCGUGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 43919 0.67 0.970235
Target:  5'- gGCGCCGACuuccaccaucaggccAACGACcagcauCCGCAacaGCAGc -3'
miRNA:   3'- -UGCGGCUGu--------------UUGUUGu-----GGCGUg--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 44456 0.67 0.980011
Target:  5'- gGCGgCGACGGGCuAGCguauaacaaGCCGCGCGaCAa -3'
miRNA:   3'- -UGCgGCUGUUUG-UUG---------UGGCGUGC-GUc -5'
29987 3' -53.6 NC_006273.1 + 44496 0.68 0.963743
Target:  5'- gGCGagCGGCGGugaGACACaCGCGCGCAc -3'
miRNA:   3'- -UGCg-GCUGUUug-UUGUG-GCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 44691 0.72 0.828231
Target:  5'- cUGCUGugGcaaagaugaGACGACGCCGCugGUGGa -3'
miRNA:   3'- uGCGGCugU---------UUGUUGUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 44804 0.72 0.810374
Target:  5'- gGCGCCGGCGGACGugacucgGCAgCCGC-UGUAGa -3'
miRNA:   3'- -UGCGGCUGUUUGU-------UGU-GGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 44842 0.67 0.977771
Target:  5'- gACGCCGACGGcCA--AUCGCgugGCGUAGg -3'
miRNA:   3'- -UGCGGCUGUUuGUugUGGCG---UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 44913 0.66 0.988775
Target:  5'- cGCGCC-----ACAACGCCGUccgGCGCAa -3'
miRNA:   3'- -UGCGGcuguuUGUUGUGGCG---UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 45440 0.71 0.867534
Target:  5'- cACGCCGgccgacgagcuGCAGACGGCugUGuCGCGCGu -3'
miRNA:   3'- -UGCGGC-----------UGUUUGUUGugGC-GUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 45471 0.69 0.944022
Target:  5'- -aGCCGACGGugaguucACAAcCACCGU-CGCAGc -3'
miRNA:   3'- ugCGGCUGUU-------UGUU-GUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 45577 0.67 0.972746
Target:  5'- aACGCugCGGCGAAaaauCGGCGCUGgGCGUAGa -3'
miRNA:   3'- -UGCG--GCUGUUU----GUUGUGGCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 47844 0.66 0.985725
Target:  5'- uCGCUGGgccuCGGCGCCGUACgGCGGg -3'
miRNA:   3'- uGCGGCUguuuGUUGUGGCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 47953 0.73 0.802503
Target:  5'- cGCGUCGucGCGGAUAACagACCGCcGCGCGGg -3'
miRNA:   3'- -UGCGGC--UGUUUGUUG--UGGCG-UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 48097 0.71 0.888683
Target:  5'- cGCcCCGGC-AACGACGCCGCAUGguCAGc -3'
miRNA:   3'- -UGcGGCUGuUUGUUGUGGCGUGC--GUC- -5'
29987 3' -53.6 NC_006273.1 + 48228 0.69 0.935168
Target:  5'- aGCGUCuGCAcgaAACGGCGuCCGCACGgAGg -3'
miRNA:   3'- -UGCGGcUGU---UUGUUGU-GGCGUGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 48642 0.67 0.980011
Target:  5'- aACGCCGuCGGcGCAcGCAgCGguCGCAGg -3'
miRNA:   3'- -UGCGGCuGUU-UGU-UGUgGCguGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.