miRNA display CGI


Results 1 - 20 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 235192 0.69 0.92494
Target:  5'- cCGCCGACAcaccCGGCACaCGCcCGCGa -3'
miRNA:   3'- uGCGGCUGUuu--GUUGUG-GCGuGCGUc -5'
29987 3' -53.6 NC_006273.1 + 234956 0.66 0.985725
Target:  5'- gACGgCGAauaaAAGCGACguGCgGCGCGCAc -3'
miRNA:   3'- -UGCgGCUg---UUUGUUG--UGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 234772 0.72 0.819819
Target:  5'- aGCGCCGugG-ACAGCaaGCCGCAgaaGCGGc -3'
miRNA:   3'- -UGCGGCugUuUGUUG--UGGCGUg--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 234736 0.7 0.895297
Target:  5'- gUGCUGugGAGCcacacGCACCggcaGCGCGCAGa -3'
miRNA:   3'- uGCGGCugUUUGu----UGUGG----CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 234643 0.72 0.844525
Target:  5'- cACGCCG-CAAACGcgcugaggACGCCGaCGCGCu- -3'
miRNA:   3'- -UGCGGCuGUUUGU--------UGUGGC-GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 234572 0.66 0.987321
Target:  5'- gGCGCUGguccGCGAAaaaaAACACCGCgggacgccACGCAa -3'
miRNA:   3'- -UGCGGC----UGUUUg---UUGUGGCG--------UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 234429 0.73 0.806016
Target:  5'- gGCGCCGGCGcccagcacgcccgaaAACAACGCCGU-CGCc- -3'
miRNA:   3'- -UGCGGCUGU---------------UUGUUGUGGCGuGCGuc -5'
29987 3' -53.6 NC_006273.1 + 234348 0.74 0.737592
Target:  5'- gACGCCGugGcccGGCGuCGCCGUagGCGCAGc -3'
miRNA:   3'- -UGCGGCugU---UUGUuGUGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 234054 0.68 0.966947
Target:  5'- cACGCCGuucaucugGCugcGCGGCGucacCCGCGCGUAGa -3'
miRNA:   3'- -UGCGGC--------UGuu-UGUUGU----GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 233722 0.83 0.280226
Target:  5'- aGCGCCGGCugAGGCAGCAgcgUCGCGCGCGGg -3'
miRNA:   3'- -UGCGGCUG--UUUGUUGU---GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 233661 0.68 0.963743
Target:  5'- cCGCCGGCGcAGCucccguccgAGCGCCGUcgccuccucggcGCGCAGc -3'
miRNA:   3'- uGCGGCUGU-UUG---------UUGUGGCG------------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 233551 0.72 0.852392
Target:  5'- gGCGCCGACGcgAACGGCucguACUGCGC-CAGc -3'
miRNA:   3'- -UGCGGCUGU--UUGUUG----UGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 233482 0.68 0.96274
Target:  5'- gACGCCaGACAGA-GACGCCGUccucggaaucguguGCGCGa -3'
miRNA:   3'- -UGCGG-CUGUUUgUUGUGGCG--------------UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 233453 0.72 0.836469
Target:  5'- -aGCCaccgcGCGGGCAGCACCGCGCcCAGc -3'
miRNA:   3'- ugCGGc----UGUUUGUUGUGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 233375 0.71 0.866797
Target:  5'- cCGCCGGCGGccuccgucuccguGCcgcuCGCCGCugGCGGc -3'
miRNA:   3'- uGCGGCUGUU-------------UGuu--GUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 233000 0.75 0.678336
Target:  5'- gGCGCCGACucgcgcccCAGCGCCaGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGuuu-----GUUGUGG-CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 232892 0.72 0.828231
Target:  5'- cGCGCCc----ACAGCGCgGCGCGCGGg -3'
miRNA:   3'- -UGCGGcuguuUGUUGUGgCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 229841 0.67 0.975352
Target:  5'- aACGgCGAgaGGACGAUcuUCGCACGCGGg -3'
miRNA:   3'- -UGCgGCUg-UUUGUUGu-GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 228466 0.72 0.828231
Target:  5'- aACGUCGACGGGCucgGCgGCUGCACGCc- -3'
miRNA:   3'- -UGCGGCUGUUUGu--UG-UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 228231 0.68 0.959618
Target:  5'- aACGCCGAagugccucccGCGAC-CCGCACGUc- -3'
miRNA:   3'- -UGCGGCUguu-------UGUUGuGGCGUGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.