miRNA display CGI


Results 21 - 40 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 227732 0.74 0.746248
Target:  5'- -gGCCGACAAaucGCAGCugucuucGCCGC-CGCAGc -3'
miRNA:   3'- ugCGGCUGUU---UGUUG-------UGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 222168 0.69 0.948768
Target:  5'- cAUGCCGcacCAGACGcuguaACGCCGCACGgGc -3'
miRNA:   3'- -UGCGGCu--GUUUGU-----UGUGGCGUGCgUc -5'
29987 3' -53.6 NC_006273.1 + 220152 0.71 0.867534
Target:  5'- gUGuuGGCAAc--GCGCCGCACGUAGu -3'
miRNA:   3'- uGCggCUGUUuguUGUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 219711 0.7 0.895297
Target:  5'- cGCGUCGACGAACGcgucgucaccagGCAgUGCAgcCGCGGg -3'
miRNA:   3'- -UGCGGCUGUUUGU------------UGUgGCGU--GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 219709 0.71 0.867534
Target:  5'- cACGgCGGCAAacaGCAGCAUCGCAaCGCc- -3'
miRNA:   3'- -UGCgGCUGUU---UGUUGUGGCGU-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 219059 0.67 0.972746
Target:  5'- cGCGCCaguucgucCAGAUGACGCgCGCACaGCAGc -3'
miRNA:   3'- -UGCGGcu------GUUUGUUGUG-GCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 218429 0.69 0.931695
Target:  5'- uACGCCGcuguCGAACAugguaaagugaagacGCGCCGCcucgcccauguguACGCAGc -3'
miRNA:   3'- -UGCGGCu---GUUUGU---------------UGUGGCG-------------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 218385 0.7 0.913776
Target:  5'- uCGCCucGACAGAgcCAGCgaaacuGCCGCGCGUAGu -3'
miRNA:   3'- uGCGG--CUGUUU--GUUG------UGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 218208 0.66 0.987321
Target:  5'- -gGCCGACGgcgGACGAC-CgGCaugGCGCGGc -3'
miRNA:   3'- ugCGGCUGU---UUGUUGuGgCG---UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 216330 0.66 0.985725
Target:  5'- aGCGCCGGCAGcguuuCGACGCUGUGagaGgGGa -3'
miRNA:   3'- -UGCGGCUGUUu----GUUGUGGCGUg--CgUC- -5'
29987 3' -53.6 NC_006273.1 + 215575 0.66 0.987321
Target:  5'- -aGCCGGugcGGCAACACCaGCcagcaaaagGCGCAGa -3'
miRNA:   3'- ugCGGCUgu-UUGUUGUGG-CG---------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 214994 0.69 0.939933
Target:  5'- gACGCCGcuGCuguGGCAGCgACCGU-CGCAGc -3'
miRNA:   3'- -UGCGGC--UGu--UUGUUG-UGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 214644 0.69 0.935168
Target:  5'- cAUGCaGACGAugGGCACgaGCACGguGa -3'
miRNA:   3'- -UGCGgCUGUUugUUGUGg-CGUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 214469 0.68 0.96274
Target:  5'- aACGCCagccccguaaaggaGAUAAACAACGCCagggucauCACGUAGg -3'
miRNA:   3'- -UGCGG--------------CUGUUUGUUGUGGc-------GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 213681 0.75 0.678336
Target:  5'- cGCGCCGACAAaggccuGCGGCgACgGCugGCAc -3'
miRNA:   3'- -UGCGGCUGUU------UGUUG-UGgCGugCGUc -5'
29987 3' -53.6 NC_006273.1 + 213325 0.66 0.985725
Target:  5'- gACGCCGguACGAuucGgAACACCaguaGCACaGCAGg -3'
miRNA:   3'- -UGCGGC--UGUU---UgUUGUGG----CGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 212508 0.69 0.92706
Target:  5'- gACGCUGACAcagacgcuguuuuuaGACAACGuuccaCGCugGUAGa -3'
miRNA:   3'- -UGCGGCUGU---------------UUGUUGUg----GCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 205635 0.73 0.802503
Target:  5'- cGCGCCGuCGAGacccuGCACUGCAUGCGc -3'
miRNA:   3'- -UGCGGCuGUUUgu---UGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 204709 0.66 0.990097
Target:  5'- uCGCCGGCGAGCccCGagGCGCGCc- -3'
miRNA:   3'- uGCGGCUGUUUGuuGUggCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 204708 0.69 0.944465
Target:  5'- cCGCCGGCAccGCGGC-CgGC-CGCAGg -3'
miRNA:   3'- uGCGGCUGUu-UGUUGuGgCGuGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.