miRNA display CGI


Results 41 - 60 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 204204 0.73 0.784583
Target:  5'- gACGCCGGCcGGCAAUGgaGCACGCu- -3'
miRNA:   3'- -UGCGGCUGuUUGUUGUggCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 203898 0.7 0.907846
Target:  5'- uUGCCGAUAGAgAuagagcGCGCCGCGCG-AGg -3'
miRNA:   3'- uGCGGCUGUUUgU------UGUGGCGUGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 203730 0.67 0.980011
Target:  5'- gUGCUGGagauAGCAGCGCaGCACGCGa -3'
miRNA:   3'- uGCGGCUgu--UUGUUGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 203724 0.66 0.982078
Target:  5'- cACGCCGuCcuuGACGACGCaGCugGCc- -3'
miRNA:   3'- -UGCGGCuGu--UUGUUGUGgCGugCGuc -5'
29987 3' -53.6 NC_006273.1 + 203559 0.7 0.913776
Target:  5'- gACGCaCGACGcguaaaaagucaAACAACGCCGggugcuCGCGUAGa -3'
miRNA:   3'- -UGCG-GCUGU------------UUGUUGUGGC------GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 202811 0.71 0.874798
Target:  5'- gACGCCgGGCAAGCAAgaaauCACCG-ACGCGa -3'
miRNA:   3'- -UGCGG-CUGUUUGUU-----GUGGCgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 202743 0.67 0.980858
Target:  5'- gACGCCGACGgccaggucauccgugAGuCGGCcugcuacgugaGCCGCGCGCu- -3'
miRNA:   3'- -UGCGGCUGU---------------UU-GUUG-----------UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 202623 0.67 0.980011
Target:  5'- cGCGCCG-CcGACu-CGCUGC-CGCAGu -3'
miRNA:   3'- -UGCGGCuGuUUGuuGUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 202086 0.7 0.913194
Target:  5'- gACGCCGAgcUGAGCAACcacgccaaccgcuGCCGC-CGCAa -3'
miRNA:   3'- -UGCGGCU--GUUUGUUG-------------UGGCGuGCGUc -5'
29987 3' -53.6 NC_006273.1 + 202037 0.67 0.975352
Target:  5'- cGCGCC-----GCAGgAUCGCACGCGGc -3'
miRNA:   3'- -UGCGGcuguuUGUUgUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 201975 0.68 0.966947
Target:  5'- cCGCCGACGccCGAgGCgGUGCGCGu -3'
miRNA:   3'- uGCGGCUGUuuGUUgUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 201391 0.66 0.987919
Target:  5'- cACGCCGagcugaggcuggagcGCAAuCGACACCuGgGCGCGu -3'
miRNA:   3'- -UGCGGC---------------UGUUuGUUGUGG-CgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 200956 0.66 0.990097
Target:  5'- cGCGCCGcCAAACG-CAUCGCucuggcCGUGGc -3'
miRNA:   3'- -UGCGGCuGUUUGUuGUGGCGu-----GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 200899 0.68 0.960327
Target:  5'- aACGCCGGCGcuUucCGCCGUcuggugcacgagGCGCAGu -3'
miRNA:   3'- -UGCGGCUGUuuGuuGUGGCG------------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 200787 0.67 0.972746
Target:  5'- gGCGCaCGGCAAguACGACAuCCGCggucugACGCu- -3'
miRNA:   3'- -UGCG-GCUGUU--UGUUGU-GGCG------UGCGuc -5'
29987 3' -53.6 NC_006273.1 + 200709 0.66 0.990097
Target:  5'- aACGCCGGCGcccaAACAUCccaaGCACGCc- -3'
miRNA:   3'- -UGCGGCUGUuug-UUGUGG----CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 200616 0.67 0.980011
Target:  5'- gACGCCGAUucguaaucGACAggagGCugUGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGu-------UUGU----UGugGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 198970 0.69 0.948768
Target:  5'- uGCGgCGACAcg-GGCACCGUguACGCGGc -3'
miRNA:   3'- -UGCgGCUGUuugUUGUGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 198928 0.72 0.852392
Target:  5'- gGCGCCGA-GGACAAgaccuucuuuCACCGCGUGCGGa -3'
miRNA:   3'- -UGCGGCUgUUUGUU----------GUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 198892 0.67 0.972746
Target:  5'- cGCGCCGcCGucGGCAACACggaaaacaGCACGcCAGc -3'
miRNA:   3'- -UGCGGCuGU--UUGUUGUGg-------CGUGC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.