miRNA display CGI


Results 61 - 80 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 198803 0.66 0.986857
Target:  5'- gGC-CCGAgAAGCAuucccuagugcugcGCACgGCGCGCGa -3'
miRNA:   3'- -UGcGGCUgUUUGU--------------UGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 197736 0.67 0.980011
Target:  5'- cGCGCCGuC-AACAGCgugccuuuuGCCGCGCGgGu -3'
miRNA:   3'- -UGCGGCuGuUUGUUG---------UGGCGUGCgUc -5'
29987 3' -53.6 NC_006273.1 + 197631 0.72 0.842928
Target:  5'- cGCGCCGACAGcuGCAGCACguggagaCGCugcgucgguuucuACGCGGc -3'
miRNA:   3'- -UGCGGCUGUU--UGUUGUG-------GCG-------------UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 197398 0.67 0.975352
Target:  5'- cGCGCUGugGGcgcGCGA-GCCGCACggGCAGu -3'
miRNA:   3'- -UGCGGCugUU---UGUUgUGGCGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 197299 0.66 0.982078
Target:  5'- gGCGCCcGCcgcCGAgGCCGCGCGgCGGc -3'
miRNA:   3'- -UGCGGcUGuuuGUUgUGGCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 197207 0.68 0.966947
Target:  5'- cCGCUgGACGGGCAcguguAC-CCGCugGCGGc -3'
miRNA:   3'- uGCGG-CUGUUUGU-----UGuGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 197182 0.66 0.988775
Target:  5'- cCGCCGuCuccgGAugAGCgGCCGCgGCGCGGg -3'
miRNA:   3'- uGCGGCuG----UUugUUG-UGGCG-UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 197134 0.66 0.990097
Target:  5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3'
miRNA:   3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 197065 0.67 0.980011
Target:  5'- gGCGgCGGCAGcggcagcagcgGCGGCGCCG-ACGguGa -3'
miRNA:   3'- -UGCgGCUGUU-----------UGUUGUGGCgUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 197038 0.66 0.98398
Target:  5'- -aGCUGACGAGCGGCAgCgGCgACGaCGGu -3'
miRNA:   3'- ugCGGCUGUUUGUUGU-GgCG-UGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 197000 0.67 0.972746
Target:  5'- gGCGgCGACGGACGGCGgCgGUAacaGCAGc -3'
miRNA:   3'- -UGCgGCUGUUUGUUGU-GgCGUg--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 196997 0.71 0.877644
Target:  5'- gGCGCCGGCGggAGCGcgauuugcgugccaaACGCggacgCGCACGCGGu -3'
miRNA:   3'- -UGCGGCUGU--UUGU---------------UGUG-----GCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196920 0.76 0.62785
Target:  5'- cCGCCGGCGggGAC-GCGCCGUGCGCGa -3'
miRNA:   3'- uGCGGCUGU--UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 196755 0.72 0.828231
Target:  5'- uGCGCCGGCAGACGAUAgucCUGCuCGgGGu -3'
miRNA:   3'- -UGCGGCUGUUUGUUGU---GGCGuGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 196632 0.75 0.708248
Target:  5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3'
miRNA:   3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 196577 0.73 0.793614
Target:  5'- gGCGCucCGACAGACGuuGCUGCGCGCc- -3'
miRNA:   3'- -UGCG--GCUGUUUGUugUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 196451 0.69 0.944465
Target:  5'- cACGCUGAUccuAGCGGCGCgCG-ACGCGGa -3'
miRNA:   3'- -UGCGGCUGu--UUGUUGUG-GCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196215 0.73 0.775418
Target:  5'- aACGCCG-CucGgAGCACCGC-CGCAGc -3'
miRNA:   3'- -UGCGGCuGuuUgUUGUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196070 0.67 0.97109
Target:  5'- gGCGCUGACGGAgcuggaauaccaggcCAuggGCGCCGUguggcGCGCGGc -3'
miRNA:   3'- -UGCGGCUGUUU---------------GU---UGUGGCG-----UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 195846 0.66 0.987167
Target:  5'- gGCGCgCGGCAuguuGC-GCGCCGUgaucuuguccgagACGCGGu -3'
miRNA:   3'- -UGCG-GCUGUu---UGuUGUGGCG-------------UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.