miRNA display CGI


Results 21 - 40 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 41508 0.74 0.736625
Target:  5'- gGCGUCGGCGugaggauGGCAGCGCCgGCGCcaGCAGg -3'
miRNA:   3'- -UGCGGCUGU-------UUGUUGUGG-CGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 143413 0.74 0.727888
Target:  5'- cACGCCGGC--GCGGCcuGCCGCGCGUu- -3'
miRNA:   3'- -UGCGGCUGuuUGUUG--UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 86691 0.76 0.64202
Target:  5'- gAUGCCGcAUAGGCGACggaggagcuccagcaGCUGCGCGCAGa -3'
miRNA:   3'- -UGCGGC-UGUUUGUUG---------------UGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196920 0.76 0.62785
Target:  5'- cCGCCGGCGggGAC-GCGCCGUGCGCGa -3'
miRNA:   3'- uGCGGCUGU--UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 182046 0.76 0.62785
Target:  5'- uUGCCGAuUGAGCAACACUGUugGCAu -3'
miRNA:   3'- uGCGGCU-GUUUGUUGUGGCGugCGUc -5'
29987 3' -53.6 NC_006273.1 + 36895 0.77 0.557485
Target:  5'- cGCGUCGuagGCGAACAcgGCGCCGUACGCGu -3'
miRNA:   3'- -UGCGGC---UGUUUGU--UGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 100911 0.79 0.452483
Target:  5'- uAC-CCGACGAgGCGGCGCCGCGCuGCAGa -3'
miRNA:   3'- -UGcGGCUGUU-UGUUGUGGCGUG-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 22254 0.8 0.399919
Target:  5'- gGCGCCGGCGAGCGACGCgGCucCGCc- -3'
miRNA:   3'- -UGCGGCUGUUUGUUGUGgCGu-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 233722 0.83 0.280226
Target:  5'- aGCGCCGGCugAGGCAGCAgcgUCGCGCGCGGg -3'
miRNA:   3'- -UGCGGCUG--UUUGUUGU---GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 145075 0.84 0.273774
Target:  5'- -aGCCG-CGGGCGACGCCGCugGCGGc -3'
miRNA:   3'- ugCGGCuGUUUGUUGUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 63977 0.76 0.64809
Target:  5'- -aGCCGACAcGCcaaggguCACCGCACGguGg -3'
miRNA:   3'- ugCGGCUGUuUGuu-----GUGGCGUGCguC- -5'
29987 3' -53.6 NC_006273.1 + 100005 0.75 0.658195
Target:  5'- cCGCCGGCAGugGCGugGuuGCugGCGGu -3'
miRNA:   3'- uGCGGCUGUU--UGUugUggCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 56380 0.75 0.712199
Target:  5'- cCGCCGGCGuuuucuccaucgcggGACcGCGCCGUGCGCAc -3'
miRNA:   3'- uGCGGCUGU---------------UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 102993 0.75 0.708248
Target:  5'- cGCGCCaGACcggaGACGCCGuCGCGCAGc -3'
miRNA:   3'- -UGCGG-CUGuuugUUGUGGC-GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196632 0.75 0.708248
Target:  5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3'
miRNA:   3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 134933 0.75 0.698329
Target:  5'- cCGCCGACAc-CGGCGCCGCgugACGCGc -3'
miRNA:   3'- uGCGGCUGUuuGUUGUGGCG---UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 103759 0.75 0.688356
Target:  5'- cGCGCCGGuacuCGAGCA--ACCGCGCGCGu -3'
miRNA:   3'- -UGCGGCU----GUUUGUugUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 233000 0.75 0.678336
Target:  5'- gGCGCCGACucgcgcccCAGCGCCaGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGuuu-----GUUGUGG-CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 213681 0.75 0.678336
Target:  5'- cGCGCCGACAAaggccuGCGGCgACgGCugGCAc -3'
miRNA:   3'- -UGCGGCUGUU------UGUUG-UGgCGugCGUc -5'
29987 3' -53.6 NC_006273.1 + 37115 0.75 0.66828
Target:  5'- aGCGCCG-CAAGUAACGCCGCAgGCc- -3'
miRNA:   3'- -UGCGGCuGUUUGUUGUGGCGUgCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.