miRNA display CGI


Results 61 - 80 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 143413 0.74 0.727888
Target:  5'- cACGCCGGC--GCGGCcuGCCGCGCGUu- -3'
miRNA:   3'- -UGCGGCUGuuUGUUG--UGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 41508 0.74 0.736625
Target:  5'- gGCGUCGGCGugaggauGGCAGCGCCgGCGCcaGCAGg -3'
miRNA:   3'- -UGCGGCUGU-------UUGUUGUGG-CGUG--CGUC- -5'
29987 3' -53.6 NC_006273.1 + 153446 0.73 0.793614
Target:  5'- gGCGCCGGCAAGacuucCAGCAUCcagguGCugGCGGc -3'
miRNA:   3'- -UGCGGCUGUUU-----GUUGUGG-----CGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196577 0.73 0.793614
Target:  5'- gGCGCucCGACAGACGuuGCUGCGCGCc- -3'
miRNA:   3'- -UGCG--GCUGUUUGUugUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 55341 0.73 0.793614
Target:  5'- cACGCCGA-AGACGGCGCCGCucuCGUu- -3'
miRNA:   3'- -UGCGGCUgUUUGUUGUGGCGu--GCGuc -5'
29987 3' -53.6 NC_006273.1 + 148782 0.73 0.793614
Target:  5'- -gGCCGGC-GGCGGCGCCGUGCGUc- -3'
miRNA:   3'- ugCGGCUGuUUGUUGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 126748 0.73 0.802503
Target:  5'- -aGuCCGGCAGGCccuGACGCUGCGCGUGGu -3'
miRNA:   3'- ugC-GGCUGUUUG---UUGUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 1516 0.73 0.802503
Target:  5'- gACGCCG-CGGACuACGCUGCuuGCGCAc -3'
miRNA:   3'- -UGCGGCuGUUUGuUGUGGCG--UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 194491 0.73 0.806016
Target:  5'- gGCGCCGGCGcccagcacgcccgaaAACAACGCCGU-CGCc- -3'
miRNA:   3'- -UGCGGCUGU---------------UUGUUGUGGCGuGCGuc -5'
29987 3' -53.6 NC_006273.1 + 143506 0.72 0.819819
Target:  5'- gGCGCCugucuccugGGCGAGCAugGCGCCGCGCuGguGu -3'
miRNA:   3'- -UGCGG---------CUGUUUGU--UGUGGCGUG-CguC- -5'
29987 3' -53.6 NC_006273.1 + 204204 0.73 0.784583
Target:  5'- gACGCCGGCcGGCAAUGgaGCACGCu- -3'
miRNA:   3'- -UGCGGCUGuUUGUUGUggCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 43135 0.73 0.784583
Target:  5'- -aGCuCGuuGAACAGCACCGUACGCc- -3'
miRNA:   3'- ugCG-GCugUUUGUUGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 234348 0.74 0.737592
Target:  5'- gACGCCGugGcccGGCGuCGCCGUagGCGCAGc -3'
miRNA:   3'- -UGCGGCugU---UUGUuGUGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 125238 0.74 0.737592
Target:  5'- aGCGgaGACGAACAacgucuGCACCGgGCGCGGc -3'
miRNA:   3'- -UGCggCUGUUUGU------UGUGGCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 142784 0.74 0.75672
Target:  5'- cCGCUGGCGAGCAACAgcagccgccgUCGCugGUGGg -3'
miRNA:   3'- uGCGGCUGUUUGUUGU----------GGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 193918 0.74 0.75672
Target:  5'- aGCGCCGuguugugaGCAGACGACGuuGgAUGCGGg -3'
miRNA:   3'- -UGCGGC--------UGUUUGUUGUggCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 21539 0.73 0.765191
Target:  5'- gGCGCUGGCGuuucgagGACGGCGgCGCGgCGCAGc -3'
miRNA:   3'- -UGCGGCUGU-------UUGUUGUgGCGU-GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 36434 0.73 0.775418
Target:  5'- uCGCCG-CAGAgAAU-CCGCACGCGGu -3'
miRNA:   3'- uGCGGCuGUUUgUUGuGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 70930 0.73 0.775418
Target:  5'- cGCGCCGACAucgucaucgAGCGGcCGCgGC-CGCAGa -3'
miRNA:   3'- -UGCGGCUGU---------UUGUU-GUGgCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 34248 0.73 0.783672
Target:  5'- cCGCCGGCAGGCAGCgGCCGaugaguuCGCGCu- -3'
miRNA:   3'- uGCGGCUGUUUGUUG-UGGC-------GUGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.