miRNA display CGI


Results 81 - 100 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 36329 0.72 0.836469
Target:  5'- uCGUCGAUGAGCAGCGCCaGCcccacGCGCAc -3'
miRNA:   3'- uGCGGCUGUUUGUUGUGG-CG-----UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 233453 0.72 0.836469
Target:  5'- -aGCCaccgcGCGGGCAGCACCGCGCcCAGc -3'
miRNA:   3'- ugCGGc----UGUUUGUUGUGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 58639 0.72 0.844525
Target:  5'- gACGCCGACAu-UAGCGCguccaaGCGCGCGu -3'
miRNA:   3'- -UGCGGCUGUuuGUUGUGg-----CGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 194705 0.72 0.844525
Target:  5'- cACGCCG-CAAACGcgcugaggACGCCGaCGCGCu- -3'
miRNA:   3'- -UGCGGCuGUUUGU--------UGUGGC-GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 153614 0.72 0.852392
Target:  5'- cCGCUGGCuGACAGCGCCGUuagccacgagACGCuGg -3'
miRNA:   3'- uGCGGCUGuUUGUUGUGGCG----------UGCGuC- -5'
29987 3' -53.6 NC_006273.1 + 233551 0.72 0.852392
Target:  5'- gGCGCCGACGcgAACGGCucguACUGCGC-CAGc -3'
miRNA:   3'- -UGCGGCUGU--UUGUUG----UGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 165244 0.71 0.860064
Target:  5'- -gGCCGGCGAGCcauCGCCGCAcuCGCu- -3'
miRNA:   3'- ugCGGCUGUUUGuu-GUGGCGU--GCGuc -5'
29987 3' -53.6 NC_006273.1 + 143506 0.72 0.819819
Target:  5'- gGCGCCugucuccugGGCGAGCAugGCGCCGCGCuGguGu -3'
miRNA:   3'- -UGCGG---------CUGUUUGU--UGUGGCGUG-CguC- -5'
29987 3' -53.6 NC_006273.1 + 194491 0.73 0.806016
Target:  5'- gGCGCCGGCGcccagcacgcccgaaAACAACGCCGU-CGCc- -3'
miRNA:   3'- -UGCGGCUGU---------------UUGUUGUGGCGuGCGuc -5'
29987 3' -53.6 NC_006273.1 + 1516 0.73 0.802503
Target:  5'- gACGCCG-CGGACuACGCUGCuuGCGCAc -3'
miRNA:   3'- -UGCGGCuGUUUGuUGUGGCG--UGCGUc -5'
29987 3' -53.6 NC_006273.1 + 70930 0.73 0.775418
Target:  5'- cGCGCCGACAucgucaucgAGCGGcCGCgGC-CGCAGa -3'
miRNA:   3'- -UGCGGCUGU---------UUGUU-GUGgCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 34248 0.73 0.783672
Target:  5'- cCGCCGGCAGGCAGCgGCCGaugaguuCGCGCu- -3'
miRNA:   3'- uGCGGCUGUUUGUUG-UGGC-------GUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 43135 0.73 0.784583
Target:  5'- -aGCuCGuuGAACAGCACCGUACGCc- -3'
miRNA:   3'- ugCG-GCugUUUGUUGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 204204 0.73 0.784583
Target:  5'- gACGCCGGCcGGCAAUGgaGCACGCu- -3'
miRNA:   3'- -UGCGGCUGuUUGUUGUggCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 153446 0.73 0.793614
Target:  5'- gGCGCCGGCAAGacuucCAGCAUCcagguGCugGCGGc -3'
miRNA:   3'- -UGCGGCUGUUU-----GUUGUGG-----CGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196577 0.73 0.793614
Target:  5'- gGCGCucCGACAGACGuuGCUGCGCGCc- -3'
miRNA:   3'- -UGCG--GCUGUUUGUugUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 55341 0.73 0.793614
Target:  5'- cACGCCGA-AGACGGCGCCGCucuCGUu- -3'
miRNA:   3'- -UGCGGCUgUUUGUUGUGGCGu--GCGuc -5'
29987 3' -53.6 NC_006273.1 + 148782 0.73 0.793614
Target:  5'- -gGCCGGC-GGCGGCGCCGUGCGUc- -3'
miRNA:   3'- ugCGGCUGuUUGUUGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 126748 0.73 0.802503
Target:  5'- -aGuCCGGCAGGCccuGACGCUGCGCGUGGu -3'
miRNA:   3'- ugC-GGCUGUUUG---UUGUGGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 90844 0.71 0.860064
Target:  5'- cGCGCCuccACAAA-AGCGCUGCGCGCAu -3'
miRNA:   3'- -UGCGGc--UGUUUgUUGUGGCGUGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.