miRNA display CGI


Results 1 - 20 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 38830 0.83 0.280226
Target:  5'- aGCGCCGGCugAGGCAGCAgcgUCGCGCGCGGg -3'
miRNA:   3'- -UGCGGCUG--UUUGUUGU---GGCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 47953 0.73 0.802503
Target:  5'- cGCGUCGucGCGGAUAACagACCGCcGCGCGGg -3'
miRNA:   3'- -UGCGGC--UGUUUGUUG--UGGCG-UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 44804 0.72 0.810374
Target:  5'- gGCGCCGGCGGACGugacucgGCAgCCGC-UGUAGa -3'
miRNA:   3'- -UGCGGCUGUUUGU-------UGU-GGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 200956 0.66 0.990097
Target:  5'- cGCGCCGcCAAACG-CAUCGCucuggcCGUGGc -3'
miRNA:   3'- -UGCGGCuGUUUGUuGUGGCGu-----GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 92090 0.75 0.66828
Target:  5'- aGCGCCGACAacuccgacaugcAAUAACGCCGUAgGCc- -3'
miRNA:   3'- -UGCGGCUGU------------UUGUUGUGGCGUgCGuc -5'
29987 3' -53.6 NC_006273.1 + 38107 0.75 0.678336
Target:  5'- gGCGCCGACucgcgcccCAGCGCCaGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGuuu-----GUUGUGG-CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 1740 0.75 0.708248
Target:  5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3'
miRNA:   3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 73696 0.75 0.708248
Target:  5'- -gGCCGugGAGCGAgUGCCGC-CGCAGc -3'
miRNA:   3'- ugCGGCugUUUGUU-GUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 104256 0.74 0.746248
Target:  5'- cCGCCGAUGagcuuacGACGACACgGCGCGUAa -3'
miRNA:   3'- uGCGGCUGU-------UUGUUGUGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 205635 0.73 0.802503
Target:  5'- cGCGCCGuCGAGacccuGCACUGCAUGCGc -3'
miRNA:   3'- -UGCGGCuGUUUgu---UGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 1684 0.73 0.793614
Target:  5'- gGCGCucCGACAGACGuuGCUGCGCGCc- -3'
miRNA:   3'- -UGCG--GCUGUUUGUugUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 227732 0.74 0.746248
Target:  5'- -gGCCGACAAaucGCAGCugucuucGCCGC-CGCAGc -3'
miRNA:   3'- ugCGGCUGUU---UGUUG-------UGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 133423 0.78 0.53774
Target:  5'- -gGCCGuCAAGCGACGCgacggcgcgCGCACGCGGg -3'
miRNA:   3'- ugCGGCuGUUUGUUGUG---------GCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 159933 0.73 0.793614
Target:  5'- cUGCCGGC-GACGGCuCCGC-CGCAGc -3'
miRNA:   3'- uGCGGCUGuUUGUUGuGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 110942 0.77 0.587466
Target:  5'- aGCGUCGGCGAGCcGCGCaCGCccGCGCGGc -3'
miRNA:   3'- -UGCGGCUGUUUGuUGUG-GCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 39455 0.74 0.737592
Target:  5'- gACGCCGugGcccGGCGuCGCCGUagGCGCAGc -3'
miRNA:   3'- -UGCGGCugU---UUGUuGUGGCG--UGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 3346 0.73 0.802503
Target:  5'- uACaCCGACAGGC-ACACCGCAuCGUAa -3'
miRNA:   3'- -UGcGGCUGUUUGuUGUGGCGU-GCGUc -5'
29987 3' -53.6 NC_006273.1 + 234429 0.73 0.806016
Target:  5'- gGCGCCGGCGcccagcacgcccgaaAACAACGCCGU-CGCc- -3'
miRNA:   3'- -UGCGGCUGU---------------UUGUUGUGGCGuGCGuc -5'
29987 3' -53.6 NC_006273.1 + 2027 0.76 0.62785
Target:  5'- cCGCCGGCGggGAC-GCGCCGUGCGCGa -3'
miRNA:   3'- uGCGGCUGU--UUGuUGUGGCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 194439 0.75 0.697334
Target:  5'- gUGCUgGGCAAgcgagucGCGACGCCGCACGCGu -3'
miRNA:   3'- uGCGG-CUGUU-------UGUUGUGGCGUGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.