Results 21 - 40 of 471 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29987 | 3' | -53.6 | NC_006273.1 | + | 234772 | 0.72 | 0.819819 |
Target: 5'- aGCGCCGugG-ACAGCaaGCCGCAgaaGCGGc -3' miRNA: 3'- -UGCGGCugUuUGUUG--UGGCGUg--CGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 44804 | 0.72 | 0.810374 |
Target: 5'- gGCGCCGGCGGACGugacucgGCAgCCGC-UGUAGa -3' miRNA: 3'- -UGCGGCUGUUUGU-------UGU-GGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 227732 | 0.74 | 0.746248 |
Target: 5'- -gGCCGACAAaucGCAGCugucuucGCCGC-CGCAGc -3' miRNA: 3'- ugCGGCUGUU---UGUUG-------UGGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 2027 | 0.76 | 0.62785 |
Target: 5'- cCGCCGGCGggGAC-GCGCCGUGCGCGa -3' miRNA: 3'- uGCGGCUGU--UUGuUGUGGCGUGCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 144343 | 0.71 | 0.860064 |
Target: 5'- gGCGuCCGA--GACGACugUGCACGUGGu -3' miRNA: 3'- -UGC-GGCUguUUGUUGugGCGUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 38560 | 0.72 | 0.836469 |
Target: 5'- -aGCCaccgcGCGGGCAGCACCGCGCcCAGc -3' miRNA: 3'- ugCGGc----UGUUUGUUGUGGCGUGcGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 47953 | 0.73 | 0.802503 |
Target: 5'- cGCGUCGucGCGGAUAACagACCGCcGCGCGGg -3' miRNA: 3'- -UGCGGC--UGUUUGUUG--UGGCG-UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 110942 | 0.77 | 0.587466 |
Target: 5'- aGCGUCGGCGAGCcGCGCaCGCccGCGCGGc -3' miRNA: 3'- -UGCGGCUGUUUGuUGUG-GCG--UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 44691 | 0.72 | 0.828231 |
Target: 5'- cUGCUGugGcaaagaugaGACGACGCCGCugGUGGa -3' miRNA: 3'- uGCGGCugU---------UUGUUGUGGCGugCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 133423 | 0.78 | 0.53774 |
Target: 5'- -gGCCGuCAAGCGACGCgacggcgcgCGCACGCGGg -3' miRNA: 3'- ugCGGCuGUUUGUUGUG---------GCGUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 234429 | 0.73 | 0.806016 |
Target: 5'- gGCGCCGGCGcccagcacgcccgaaAACAACGCCGU-CGCc- -3' miRNA: 3'- -UGCGGCUGU---------------UUGUUGUGGCGuGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 147638 | 0.72 | 0.819819 |
Target: 5'- aACGCCG-C-GACAACgGCCGC-CGCAGc -3' miRNA: 3'- -UGCGGCuGuUUGUUG-UGGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 159933 | 0.73 | 0.793614 |
Target: 5'- cUGCCGGC-GACGGCuCCGC-CGCAGc -3' miRNA: 3'- uGCGGCUGuUUGUUGuGGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 104256 | 0.74 | 0.746248 |
Target: 5'- cCGCCGAUGagcuuacGACGACACgGCGCGUAa -3' miRNA: 3'- uGCGGCUGU-------UUGUUGUGgCGUGCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 1740 | 0.75 | 0.708248 |
Target: 5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3' miRNA: 3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 92090 | 0.75 | 0.66828 |
Target: 5'- aGCGCCGACAacuccgacaugcAAUAACGCCGUAgGCc- -3' miRNA: 3'- -UGCGGCUGU------------UUGUUGUGGCGUgCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 42754 | 0.71 | 0.867534 |
Target: 5'- aGCGaCGGCGAGCuACGCCGCGaguCGCAu -3' miRNA: 3'- -UGCgGCUGUUUGuUGUGGCGU---GCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 38482 | 0.71 | 0.866797 |
Target: 5'- cCGCCGGCGGccuccgucuccguGCcgcuCGCCGCugGCGGc -3' miRNA: 3'- uGCGGCUGUU-------------UGuu--GUGGCGugCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 234643 | 0.72 | 0.844525 |
Target: 5'- cACGCCG-CAAACGcgcugaggACGCCGaCGCGCu- -3' miRNA: 3'- -UGCGGCuGUUUGU--------UGUGGC-GUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 197631 | 0.72 | 0.842928 |
Target: 5'- cGCGCCGACAGcuGCAGCACguggagaCGCugcgucgguuucuACGCGGc -3' miRNA: 3'- -UGCGGCUGUU--UGUUGUG-------GCG-------------UGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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