Results 41 - 60 of 471 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29987 | 3' | -53.6 | NC_006273.1 | + | 38659 | 0.72 | 0.852392 |
Target: 5'- gGCGCCGACGcgAACGGCucguACUGCGC-CAGc -3' miRNA: 3'- -UGCGGCUGU--UUGUUG----UGGCGUGcGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 47953 | 0.73 | 0.802503 |
Target: 5'- cGCGUCGucGCGGAUAACagACCGCcGCGCGGg -3' miRNA: 3'- -UGCGGC--UGUUUGUUG--UGGCG-UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 110942 | 0.77 | 0.587466 |
Target: 5'- aGCGUCGGCGAGCcGCGCaCGCccGCGCGGc -3' miRNA: 3'- -UGCGGCUGUUUGuUGUG-GCG--UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 198928 | 0.72 | 0.852392 |
Target: 5'- gGCGCCGA-GGACAAgaccuucuuuCACCGCGUGCGGa -3' miRNA: 3'- -UGCGGCUgUUUGUU----------GUGGCGUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 133423 | 0.78 | 0.53774 |
Target: 5'- -gGCCGuCAAGCGACGCgacggcgcgCGCACGCGGg -3' miRNA: 3'- ugCGGCuGUUUGUUGUG---------GCGUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 147536 | 0.7 | 0.901685 |
Target: 5'- aACGCCGGCGAA-GACGagGCugGCGGc -3' miRNA: 3'- -UGCGGCUGUUUgUUGUggCGugCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 92090 | 0.75 | 0.66828 |
Target: 5'- aGCGCCGACAacuccgacaugcAAUAACGCCGUAgGCc- -3' miRNA: 3'- -UGCGGCUGU------------UUGUUGUGGCGUgCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 86988 | 0.7 | 0.895297 |
Target: 5'- cACGaaaCCGACAGGCGugACCagACGCAGa -3' miRNA: 3'- -UGC---GGCUGUUUGUugUGGcgUGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 166051 | 0.7 | 0.895297 |
Target: 5'- uCGCCGGCcugcguGACGAUuuGCCGCAUGCc- -3' miRNA: 3'- uGCGGCUGu-----UUGUUG--UGGCGUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 192874 | 0.71 | 0.888683 |
Target: 5'- cACGCCGugGAaaacgGCGACucgGCCGaCACGCu- -3' miRNA: 3'- -UGCGGCugUU-----UGUUG---UGGC-GUGCGuc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 117460 | 0.71 | 0.881849 |
Target: 5'- cCGaggaCGAC-GACGACGCCGC-CGCGGu -3' miRNA: 3'- uGCg---GCUGuUUGUUGUGGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 42754 | 0.71 | 0.867534 |
Target: 5'- aGCGaCGGCGAGCuACGCCGCGaguCGCAu -3' miRNA: 3'- -UGCgGCUGUUUGuUGUGGCGU---GCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 38482 | 0.71 | 0.866797 |
Target: 5'- cCGCCGGCGGccuccgucuccguGCcgcuCGCCGCugGCGGc -3' miRNA: 3'- uGCGGCUGUU-------------UGuu--GUGGCGugCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 131665 | 0.72 | 0.844525 |
Target: 5'- gACGCUGAC--GCGGCGCCcgaaGCGCAGu -3' miRNA: 3'- -UGCGGCUGuuUGUUGUGGcg--UGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 44691 | 0.72 | 0.828231 |
Target: 5'- cUGCUGugGcaaagaugaGACGACGCCGCugGUGGa -3' miRNA: 3'- uGCGGCugU---------UUGUUGUGGCGugCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 234772 | 0.72 | 0.819819 |
Target: 5'- aGCGCCGugG-ACAGCaaGCCGCAgaaGCGGc -3' miRNA: 3'- -UGCGGCugUuUGUUG--UGGCGUg--CGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 44804 | 0.72 | 0.810374 |
Target: 5'- gGCGCCGGCGGACGugacucgGCAgCCGC-UGUAGa -3' miRNA: 3'- -UGCGGCUGUUUGU-------UGU-GGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 159933 | 0.73 | 0.793614 |
Target: 5'- cUGCCGGC-GACGGCuCCGC-CGCAGc -3' miRNA: 3'- uGCGGCUGuUUGUUGuGGCGuGCGUC- -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 104256 | 0.74 | 0.746248 |
Target: 5'- cCGCCGAUGagcuuacGACGACACgGCGCGUAa -3' miRNA: 3'- uGCGGCUGU-------UUGUUGUGgCGUGCGUc -5' |
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29987 | 3' | -53.6 | NC_006273.1 | + | 1740 | 0.75 | 0.708248 |
Target: 5'- uGCGCCGGCGGugGGC-CgGCACGaCGGu -3' miRNA: 3'- -UGCGGCUGUUugUUGuGgCGUGC-GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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