miRNA display CGI


Results 61 - 80 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 38482 0.71 0.866797
Target:  5'- cCGCCGGCGGccuccgucuccguGCcgcuCGCCGCugGCGGc -3'
miRNA:   3'- uGCGGCUGUU-------------UGuu--GUGGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 202811 0.71 0.874798
Target:  5'- gACGCCgGGCAAGCAAgaaauCACCG-ACGCGa -3'
miRNA:   3'- -UGCGG-CUGUUUGUU-----GUGGCgUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 38107 0.75 0.678336
Target:  5'- gGCGCCGACucgcgcccCAGCGCCaGCGCGCc- -3'
miRNA:   3'- -UGCGGCUGuuu-----GUUGUGG-CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 73696 0.75 0.708248
Target:  5'- -gGCCGugGAGCGAgUGCCGC-CGCAGc -3'
miRNA:   3'- ugCGGCugUUUGUU-GUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 196215 0.73 0.775418
Target:  5'- aACGCCG-CucGgAGCACCGC-CGCAGc -3'
miRNA:   3'- -UGCGGCuGuuUgUUGUGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 3346 0.73 0.802503
Target:  5'- uACaCCGACAGGC-ACACCGCAuCGUAa -3'
miRNA:   3'- -UGcGGCUGUUUGuUGUGGCGU-GCGUc -5'
29987 3' -53.6 NC_006273.1 + 118402 0.72 0.81124
Target:  5'- cGCGUCGACAGcagugcugccGCAGCGCUgccacuguGCACGUAGc -3'
miRNA:   3'- -UGCGGCUGUU----------UGUUGUGG--------CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 147638 0.72 0.819819
Target:  5'- aACGCCG-C-GACAACgGCCGC-CGCAGc -3'
miRNA:   3'- -UGCGGCuGuUUGUUG-UGGCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38560 0.72 0.836469
Target:  5'- -aGCCaccgcGCGGGCAGCACCGCGCcCAGc -3'
miRNA:   3'- ugCGGc----UGUUUGUUGUGGCGUGcGUC- -5'
29987 3' -53.6 NC_006273.1 + 147344 0.72 0.844525
Target:  5'- gACGCCGACGcccagcgauuAACgGACGCCGC-CGgGGg -3'
miRNA:   3'- -UGCGGCUGU----------UUG-UUGUGGCGuGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 91376 0.69 0.930171
Target:  5'- gGCGUaaGACAGacGCAGCACCGUAaaggGCAGa -3'
miRNA:   3'- -UGCGg-CUGUU--UGUUGUGGCGUg---CGUC- -5'
29987 3' -53.6 NC_006273.1 + 87536 0.69 0.92494
Target:  5'- cCGgCGGCAGACGGuCACCGCGCa--- -3'
miRNA:   3'- uGCgGCUGUUUGUU-GUGGCGUGcguc -5'
29987 3' -53.6 NC_006273.1 + 110411 0.71 0.888683
Target:  5'- gACGCUGACGuu-GAUGCgGCGCGUAGa -3'
miRNA:   3'- -UGCGGCUGUuugUUGUGgCGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 234736 0.7 0.895297
Target:  5'- gUGCUGugGAGCcacacGCACCggcaGCGCGCAGa -3'
miRNA:   3'- uGCGGCugUUUGu----UGUGG----CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 86988 0.7 0.895297
Target:  5'- cACGaaaCCGACAGGCGugACCagACGCAGa -3'
miRNA:   3'- -UGC---GGCUGUUUGUugUGGcgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 147536 0.7 0.901685
Target:  5'- aACGCCGGCGAA-GACGagGCugGCGGc -3'
miRNA:   3'- -UGCGGCUGUUUgUUGUggCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 142914 0.7 0.907846
Target:  5'- -aGUCGACAcACAACACCGUuccccaucACGguGu -3'
miRNA:   3'- ugCGGCUGUuUGUUGUGGCG--------UGCguC- -5'
29987 3' -53.6 NC_006273.1 + 203898 0.7 0.907846
Target:  5'- uUGCCGAUAGAgAuagagcGCGCCGCGCG-AGg -3'
miRNA:   3'- uGCGGCUGUUUgU------UGUGGCGUGCgUC- -5'
29987 3' -53.6 NC_006273.1 + 57231 0.7 0.917789
Target:  5'- cCGCCucgGAaauggaagaaccuuCGAACAGCACCaGCugGCAGa -3'
miRNA:   3'- uGCGG---CU--------------GUUUGUUGUGG-CGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 81335 0.7 0.919474
Target:  5'- aGCGCCGAgAGcacguCAACGCCcuugcGCACGCu- -3'
miRNA:   3'- -UGCGGCUgUUu----GUUGUGG-----CGUGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.