miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29988 3' -49.2 NC_006273.1 + 94324 0.66 0.999912
Target:  5'- cCGAGGCccgGCGCCGgUCCG---UC-CGCg -3'
miRNA:   3'- -GCUUUGa--UGCGGC-AGGUugaAGuGCG- -5'
29988 3' -49.2 NC_006273.1 + 202215 0.66 0.999912
Target:  5'- --cAugUACGCCGUuuUCGGCcUCACGa -3'
miRNA:   3'- gcuUugAUGCGGCA--GGUUGaAGUGCg -5'
29988 3' -49.2 NC_006273.1 + 28804 0.66 0.999912
Target:  5'- -cAAACUACGCCGgggCCcuaGGCcgCACGg -3'
miRNA:   3'- gcUUUGAUGCGGCa--GG---UUGaaGUGCg -5'
29988 3' -49.2 NC_006273.1 + 73163 0.66 0.999912
Target:  5'- aCGuuuCUAcCGCCGcuuccUCCGGCUgcaGCGCa -3'
miRNA:   3'- -GCuuuGAU-GCGGC-----AGGUUGAag-UGCG- -5'
29988 3' -49.2 NC_006273.1 + 182559 0.66 0.999912
Target:  5'- cCGG--UUACGCCG-CCAACaUgGCGUa -3'
miRNA:   3'- -GCUuuGAUGCGGCaGGUUGaAgUGCG- -5'
29988 3' -49.2 NC_006273.1 + 103521 0.66 0.999912
Target:  5'- ---uACUAgGCgGUCCAACUgcagC-CGCu -3'
miRNA:   3'- gcuuUGAUgCGgCAGGUUGAa---GuGCG- -5'
29988 3' -49.2 NC_006273.1 + 146402 0.66 0.999912
Target:  5'- uCGAAGuCUucaucauCGUCGUCCucuuCUUCGCGg -3'
miRNA:   3'- -GCUUU-GAu------GCGGCAGGuu--GAAGUGCg -5'
29988 3' -49.2 NC_006273.1 + 155683 0.66 0.999912
Target:  5'- cCGugGCUACgGCC-UC--ACUUCGCGCa -3'
miRNA:   3'- -GCuuUGAUG-CGGcAGguUGAAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 33897 0.66 0.99991
Target:  5'- gCGAAGCccaggucacgugaUACGCUGUCCugGACggggcCACGUc -3'
miRNA:   3'- -GCUUUG-------------AUGCGGCAGG--UUGaa---GUGCG- -5'
29988 3' -49.2 NC_006273.1 + 70166 0.66 0.99991
Target:  5'- cCGAGAcCUACGCCucgguGUCCGaauugguacagACguuguuucagauuUUCACGCa -3'
miRNA:   3'- -GCUUU-GAUGCGG-----CAGGU-----------UG-------------AAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 38987 0.66 0.999905
Target:  5'- gCGGAACccgGCGCCcagcgccagguacaGUCCGucCUgCGCGCa -3'
miRNA:   3'- -GCUUUGa--UGCGG--------------CAGGUu-GAaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 233880 0.66 0.999905
Target:  5'- gCGGAACccgGCGCCcagcgccagguacaGUCCGucCUgCGCGCa -3'
miRNA:   3'- -GCUUUGa--UGCGG--------------CAGGUu-GAaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 70151 0.66 0.999887
Target:  5'- gCGAuGGCU-CGCCGgCCGugUaCACGUg -3'
miRNA:   3'- -GCU-UUGAuGCGGCaGGUugAaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 80513 0.66 0.999887
Target:  5'- aGAAACggccgcccUGCGCCGUaggCAACUUgcagaaGCGCu -3'
miRNA:   3'- gCUUUG--------AUGCGGCAg--GUUGAAg-----UGCG- -5'
29988 3' -49.2 NC_006273.1 + 144148 0.66 0.999887
Target:  5'- aGcgGC-ACGCCG-CCGaaGCcUCGCGCg -3'
miRNA:   3'- gCuuUGaUGCGGCaGGU--UGaAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 14279 0.66 0.999884
Target:  5'- ------gACGCCGguugUCCGGCUgagagugUCGCGCa -3'
miRNA:   3'- gcuuugaUGCGGC----AGGUUGA-------AGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 196443 0.66 0.999854
Target:  5'- gCGAacAAC-ACGCUGaUCCuAGCggCGCGCg -3'
miRNA:   3'- -GCU--UUGaUGCGGC-AGG-UUGaaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 104202 0.66 0.999854
Target:  5'- gCGuuGACggcgAUGCgGUCCAGacUCACGCc -3'
miRNA:   3'- -GCu-UUGa---UGCGgCAGGUUgaAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 75714 0.66 0.999854
Target:  5'- gCGgcGCUcagcACGCUcaucaucauGUCCGAgUUUACGCa -3'
miRNA:   3'- -GCuuUGA----UGCGG---------CAGGUUgAAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 59436 0.66 0.999854
Target:  5'- uCGAGAUUucUGUCG-CCGACUaaauucaugUCGCGCg -3'
miRNA:   3'- -GCUUUGAu-GCGGCaGGUUGA---------AGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.