miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29988 3' -49.2 NC_006273.1 + 117314 0.66 0.999814
Target:  5'- --cAGCguCGCCGUCCGuuCUUCcCGCg -3'
miRNA:   3'- gcuUUGauGCGGCAGGUu-GAAGuGCG- -5'
29988 3' -49.2 NC_006273.1 + 163370 0.66 0.999854
Target:  5'- gCGGGACUGuCGUCGUCaaccacagCAGCgUCGCGa -3'
miRNA:   3'- -GCUUUGAU-GCGGCAG--------GUUGaAGUGCg -5'
29988 3' -49.2 NC_006273.1 + 196909 0.66 0.999764
Target:  5'- gGAGACggAgGCCG-CCGGCggggaCGCGCc -3'
miRNA:   3'- gCUUUGa-UgCGGCaGGUUGaa---GUGCG- -5'
29988 3' -49.2 NC_006273.1 + 67172 0.66 0.999764
Target:  5'- aGGAuCUGCguGCCG-CCAACgcCACGUa -3'
miRNA:   3'- gCUUuGAUG--CGGCaGGUUGaaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 69690 0.66 0.999814
Target:  5'- aGGAGCUGacgGCCG-CCGA--UCGCGUa -3'
miRNA:   3'- gCUUUGAUg--CGGCaGGUUgaAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 80513 0.66 0.999887
Target:  5'- aGAAACggccgcccUGCGCCGUaggCAACUUgcagaaGCGCu -3'
miRNA:   3'- gCUUUG--------AUGCGGCAg--GUUGAAg-----UGCG- -5'
29988 3' -49.2 NC_006273.1 + 57662 0.66 0.999854
Target:  5'- uCGcAGCUGCuggauaGCCGUCUuguacGGCUUCAgcCGCa -3'
miRNA:   3'- -GCuUUGAUG------CGGCAGG-----UUGAAGU--GCG- -5'
29988 3' -49.2 NC_006273.1 + 144148 0.66 0.999887
Target:  5'- aGcgGC-ACGCCG-CCGaaGCcUCGCGCg -3'
miRNA:   3'- gCuuUGaUGCGGCaGGU--UGaAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 129445 0.66 0.999764
Target:  5'- aGGAGCUcgaGCGCCGaCCAG-UUCuccauCGCg -3'
miRNA:   3'- gCUUUGA---UGCGGCaGGUUgAAGu----GCG- -5'
29988 3' -49.2 NC_006273.1 + 33897 0.66 0.99991
Target:  5'- gCGAAGCccaggucacgugaUACGCUGUCCugGACggggcCACGUc -3'
miRNA:   3'- -GCUUUG-------------AUGCGGCAGG--UUGaa---GUGCG- -5'
29988 3' -49.2 NC_006273.1 + 233880 0.66 0.999905
Target:  5'- gCGGAACccgGCGCCcagcgccagguacaGUCCGucCUgCGCGCa -3'
miRNA:   3'- -GCUUUGa--UGCGG--------------CAGGUu-GAaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 187339 0.66 0.999854
Target:  5'- uCGGucAGCgGCGCCGucaccgccaugUCCGGCggaggCACGCu -3'
miRNA:   3'- -GCU--UUGaUGCGGC-----------AGGUUGaa---GUGCG- -5'
29988 3' -49.2 NC_006273.1 + 81373 0.66 0.999814
Target:  5'- aGuAGCUGCGCUGcCCGAaaacgUUgACGCa -3'
miRNA:   3'- gCuUUGAUGCGGCaGGUUg----AAgUGCG- -5'
29988 3' -49.2 NC_006273.1 + 75714 0.66 0.999854
Target:  5'- gCGgcGCUcagcACGCUcaucaucauGUCCGAgUUUACGCa -3'
miRNA:   3'- -GCuuUGA----UGCGG---------CAGGUUgAAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 30369 0.66 0.999764
Target:  5'- aGGAugUcgucGCGgCGUCgCAGCUcgUCACGUc -3'
miRNA:   3'- gCUUugA----UGCgGCAG-GUUGA--AGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 196443 0.66 0.999854
Target:  5'- gCGAacAAC-ACGCUGaUCCuAGCggCGCGCg -3'
miRNA:   3'- -GCU--UUGaUGCGGC-AGG-UUGaaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 135143 0.66 0.999814
Target:  5'- uGGAACUGguCG-CGUCCGugUUCGaGCa -3'
miRNA:   3'- gCUUUGAU--GCgGCAGGUugAAGUgCG- -5'
29988 3' -49.2 NC_006273.1 + 202215 0.66 0.999912
Target:  5'- --cAugUACGCCGUuuUCGGCcUCACGa -3'
miRNA:   3'- gcuUugAUGCGGCA--GGUUGaAGUGCg -5'
29988 3' -49.2 NC_006273.1 + 101430 0.66 0.999764
Target:  5'- gCGAGGCgGCGCCGaCgGuauCUUC-CGCg -3'
miRNA:   3'- -GCUUUGaUGCGGCaGgUu--GAAGuGCG- -5'
29988 3' -49.2 NC_006273.1 + 66339 0.66 0.999814
Target:  5'- uGAAagcGCUGCaGCCGUUgGACgacaACGCc -3'
miRNA:   3'- gCUU---UGAUG-CGGCAGgUUGaag-UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.