miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29988 3' -49.2 NC_006273.1 + 475 0.68 0.998956
Target:  5'- aCGcAACUAgucgccguCGCCGUCCAca--CACGCa -3'
miRNA:   3'- -GCuUUGAU--------GCGGCAGGUugaaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 1508 0.67 0.999527
Target:  5'- uGGAGCUcgACGCCG-CgGACUacgcugcUUGCGCa -3'
miRNA:   3'- gCUUUGA--UGCGGCaGgUUGA-------AGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 1550 0.66 0.999854
Target:  5'- gCGAacAAC-ACGCUGaUCCuAGCggCGCGCg -3'
miRNA:   3'- -GCU--UUGaUGCGGC-AGG-UUGaaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 1734 0.68 0.998184
Target:  5'- gGGAGCUGCGCCGgcggUgGGCcggCACGa -3'
miRNA:   3'- gCUUUGAUGCGGCa---GgUUGaa-GUGCg -5'
29988 3' -49.2 NC_006273.1 + 2016 0.66 0.999764
Target:  5'- gGAGACggAgGCCG-CCGGCggggaCGCGCc -3'
miRNA:   3'- gCUUUGa-UgCGGCaGGUUGaa---GUGCG- -5'
29988 3' -49.2 NC_006273.1 + 2171 1.13 0.014327
Target:  5'- cCGAAACUACGCCGUCCAACUUCACGCc -3'
miRNA:   3'- -GCUUUGAUGCGGCAGGUUGAAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 4305 0.66 0.999814
Target:  5'- cCGAAGgUGCGCaucaCGcUCUugUUUCACGCg -3'
miRNA:   3'- -GCUUUgAUGCG----GC-AGGuuGAAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 5516 0.69 0.996453
Target:  5'- uGGAACaccACGCgGUCCGGCUcagccCGCGUg -3'
miRNA:   3'- gCUUUGa--UGCGgCAGGUUGAa----GUGCG- -5'
29988 3' -49.2 NC_006273.1 + 6359 0.73 0.963585
Target:  5'- cCGAGgaaUACGCCGUaccCCAACggcCGCGCa -3'
miRNA:   3'- -GCUUug-AUGCGGCA---GGUUGaa-GUGCG- -5'
29988 3' -49.2 NC_006273.1 + 6572 0.71 0.990312
Target:  5'- gCGAguagucGACUACGCgaCG-CCAACUcucuUCGCGCu -3'
miRNA:   3'- -GCU------UUGAUGCG--GCaGGUUGA----AGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 10222 0.67 0.999428
Target:  5'- uCGguGCauggACGCCGUCUggUc-CACGCa -3'
miRNA:   3'- -GCuuUGa---UGCGGCAGGuuGaaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 12700 0.66 0.999854
Target:  5'- gCGAGucGCUAC-CC-UCCGGCgucuUUCACGCc -3'
miRNA:   3'- -GCUU--UGAUGcGGcAGGUUG----AAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 14279 0.66 0.999884
Target:  5'- ------gACGCCGguugUCCGGCUgagagugUCGCGCa -3'
miRNA:   3'- gcuuugaUGCGGC----AGGUUGA-------AGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 16147 0.67 0.999297
Target:  5'- cCGGAGCUGCG-CGaCCAACUgCugGa -3'
miRNA:   3'- -GCUUUGAUGCgGCaGGUUGAaGugCg -5'
29988 3' -49.2 NC_006273.1 + 18836 0.7 0.995177
Target:  5'- aGGAGCUGC-CCGUCUGucACcaCACGCu -3'
miRNA:   3'- gCUUUGAUGcGGCAGGU--UGaaGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 19960 0.71 0.98592
Target:  5'- uGAGAC--CGCCGUCaucaCAGCaUCACGCc -3'
miRNA:   3'- gCUUUGauGCGGCAG----GUUGaAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 21659 0.7 0.995177
Target:  5'- cCGAGACcacgGCGCUGguggCCGACgugCACGa -3'
miRNA:   3'- -GCUUUGa---UGCGGCa---GGUUGaa-GUGCg -5'
29988 3' -49.2 NC_006273.1 + 23885 0.66 0.999854
Target:  5'- uGGGcuAUUACGCCauggcgCuCAGCUUCAUGCu -3'
miRNA:   3'- gCUU--UGAUGCGGca----G-GUUGAAGUGCG- -5'
29988 3' -49.2 NC_006273.1 + 25165 0.68 0.999141
Target:  5'- -aGAACUAcCGUCGUCCGACgcgaUgACGUu -3'
miRNA:   3'- gcUUUGAU-GCGGCAGGUUGa---AgUGCG- -5'
29988 3' -49.2 NC_006273.1 + 28804 0.66 0.999912
Target:  5'- -cAAACUACGCCGgggCCcuaGGCcgCACGg -3'
miRNA:   3'- gcUUUGAUGCGGCa--GG---UUGaaGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.