miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29988 5' -59.2 NC_006273.1 + 94804 0.66 0.888786
Target:  5'- gGCugGggucgcGGCGgUcGGcCGACGACGaCGGUa -3'
miRNA:   3'- -CGugUa-----CCGCgA-CC-GCUGCUGC-GCCA- -5'
29988 5' -59.2 NC_006273.1 + 169736 0.66 0.888786
Target:  5'- gGCGC-UGGUGUUGGCaGGCaACgGCGGc -3'
miRNA:   3'- -CGUGuACCGCGACCG-CUGcUG-CGCCa -5'
29988 5' -59.2 NC_006273.1 + 176699 0.66 0.888786
Target:  5'- -aGCGUGcuGCGCgaguUGGUGAcCGAgGCGGUg -3'
miRNA:   3'- cgUGUAC--CGCG----ACCGCU-GCUgCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 115793 0.66 0.888786
Target:  5'- gGCACcccaGUGGCGCgugaagaaGGCcgccaGACGAaacaaGCGGUg -3'
miRNA:   3'- -CGUG----UACCGCGa-------CCG-----CUGCUg----CGCCA- -5'
29988 5' -59.2 NC_006273.1 + 161616 0.66 0.888786
Target:  5'- cCAcCAUGGUcgccGCUGGCGGCGcCGCu-- -3'
miRNA:   3'- cGU-GUACCG----CGACCGCUGCuGCGcca -5'
29988 5' -59.2 NC_006273.1 + 145562 0.66 0.888786
Target:  5'- cGgGCGgcGGUGCUGGCGgGgGugGUGGa -3'
miRNA:   3'- -CgUGUa-CCGCGACCGC-UgCugCGCCa -5'
29988 5' -59.2 NC_006273.1 + 213120 0.66 0.888786
Target:  5'- aGCGCGUGGCuGCgaugGaGCGGC-ACGaUGGUg -3'
miRNA:   3'- -CGUGUACCG-CGa---C-CGCUGcUGC-GCCA- -5'
29988 5' -59.2 NC_006273.1 + 141090 0.66 0.888786
Target:  5'- cCACGUcGGCaaguuGCUGGaCGcucucucgcugaACGACGCGGg -3'
miRNA:   3'- cGUGUA-CCG-----CGACC-GC------------UGCUGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 211754 0.66 0.88814
Target:  5'- aGCACGcuauaaaUGGUgagcaggcccggGCUcGGCGGCGACGUGa- -3'
miRNA:   3'- -CGUGU-------ACCG------------CGA-CCGCUGCUGCGCca -5'
29988 5' -59.2 NC_006273.1 + 51569 0.66 0.886842
Target:  5'- ---gGUGGCgGCggaggacggaggggUGGCGGCGGCaGCGGg -3'
miRNA:   3'- cgugUACCG-CG--------------ACCGCUGCUG-CGCCa -5'
29988 5' -59.2 NC_006273.1 + 38506 0.66 0.882234
Target:  5'- cCGCucgcCGCUGGCGGCGACGUcGUc -3'
miRNA:   3'- cGUGuaccGCGACCGCUGCUGCGcCA- -5'
29988 5' -59.2 NC_006273.1 + 233399 0.66 0.882234
Target:  5'- cCGCucgcCGCUGGCGGCGACGUcGUc -3'
miRNA:   3'- cGUGuaccGCGACCGCUGCUGCGcCA- -5'
29988 5' -59.2 NC_006273.1 + 7167 0.66 0.882234
Target:  5'- gGCACuucGGCGUUcuuucccaacGGCGugGACGgucucCGGUg -3'
miRNA:   3'- -CGUGua-CCGCGA----------CCGCugCUGC-----GCCA- -5'
29988 5' -59.2 NC_006273.1 + 101997 0.66 0.875482
Target:  5'- gGCGcCGUGGgGCUgaaagaggaGGaCGugGgGCGCGGUa -3'
miRNA:   3'- -CGU-GUACCgCGA---------CC-GCugC-UGCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 59392 0.66 0.875482
Target:  5'- uGCACAUGGCcgcccaaCUGGCGuC-ACGCGa- -3'
miRNA:   3'- -CGUGUACCGc------GACCGCuGcUGCGCca -5'
29988 5' -59.2 NC_006273.1 + 198989 0.66 0.875482
Target:  5'- uGUACGcGGCGCUGGUGGggcaggauaaguUGGUGCGGc -3'
miRNA:   3'- -CGUGUaCCGCGACCGCU------------GCUGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 15625 0.66 0.875482
Target:  5'- aGCGCGaGGcCGCUGGUcaucagGACGAUaCGGg -3'
miRNA:   3'- -CGUGUaCC-GCGACCG------CUGCUGcGCCa -5'
29988 5' -59.2 NC_006273.1 + 51619 0.66 0.868533
Target:  5'- aCACG-GGCGaCggcaGGCucGGCGGCGCGGa -3'
miRNA:   3'- cGUGUaCCGC-Ga---CCG--CUGCUGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 145193 0.66 0.868533
Target:  5'- aGCAUuUGGCGUUGGUG-UGugGCa-- -3'
miRNA:   3'- -CGUGuACCGCGACCGCuGCugCGcca -5'
29988 5' -59.2 NC_006273.1 + 171164 0.66 0.868533
Target:  5'- aGguCAUcGGCGCUaGCGcGCGAUGuCGGUg -3'
miRNA:   3'- -CguGUA-CCGCGAcCGC-UGCUGC-GCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.