miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29988 5' -59.2 NC_006273.1 + 167227 0.66 0.867828
Target:  5'- gGCcgGUGGUgGCUGGUaaggucgaucaugGGCGGCGUGGUg -3'
miRNA:   3'- -CGugUACCG-CGACCG-------------CUGCUGCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 197037 0.66 0.861393
Target:  5'- cGCACgcgGUGGUcggggcggacGCgacGGCGGCGGCaGCGGc -3'
miRNA:   3'- -CGUG---UACCG----------CGa--CCGCUGCUG-CGCCa -5'
29988 5' -59.2 NC_006273.1 + 186238 0.66 0.861393
Target:  5'- cGC-CAUGGaCGCcgucuaccgucUGGcCGAgGACGUGGUu -3'
miRNA:   3'- -CGuGUACC-GCG-----------ACC-GCUgCUGCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 102289 0.66 0.861393
Target:  5'- aCGCGUGGCgGC-GGUGACaggggcaACGCGGg -3'
miRNA:   3'- cGUGUACCG-CGaCCGCUGc------UGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 2144 0.66 0.861393
Target:  5'- cGCACgcgGUGGUcggggcggacGCgacGGCGGCGGCaGCGGc -3'
miRNA:   3'- -CGUG---UACCG----------CGa--CCGCUGCUG-CGCCa -5'
29988 5' -59.2 NC_006273.1 + 149322 0.66 0.854067
Target:  5'- ----uUGGCGCaaacuuuuUGGCGGCGACGaucCGGg -3'
miRNA:   3'- cguguACCGCG--------ACCGCUGCUGC---GCCa -5'
29988 5' -59.2 NC_006273.1 + 83651 0.66 0.854067
Target:  5'- gGC-CGU-GCGCaaGGCGcGCGACGCGGc -3'
miRNA:   3'- -CGuGUAcCGCGa-CCGC-UGCUGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 179742 0.67 0.846559
Target:  5'- uGCGCGaagaacUGGgcuaugucCGCUucgagaccGGCGGCGACGUGGg -3'
miRNA:   3'- -CGUGU------ACC--------GCGA--------CCGCUGCUGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 176814 0.67 0.846559
Target:  5'- uGCACAUcGGCgugGCUGGCuugcacacGGCGcucAUGCGGUu -3'
miRNA:   3'- -CGUGUA-CCG---CGACCG--------CUGC---UGCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 37136 0.67 0.846559
Target:  5'- cGCGgA-GGUGCUGGCGGcCGugGCc-- -3'
miRNA:   3'- -CGUgUaCCGCGACCGCU-GCugCGcca -5'
29988 5' -59.2 NC_006273.1 + 203383 0.67 0.846559
Target:  5'- ----cUGGCGCaggugGGUGGCG-CGCGGg -3'
miRNA:   3'- cguguACCGCGa----CCGCUGCuGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 131525 0.67 0.846559
Target:  5'- cGUGCAUGG-GCUGGagGACcAgGCGGUg -3'
miRNA:   3'- -CGUGUACCgCGACCg-CUGcUgCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 202304 0.67 0.846559
Target:  5'- -gACGaGGCGC-GGCGAUGACGagcaGGc -3'
miRNA:   3'- cgUGUaCCGCGaCCGCUGCUGCg---CCa -5'
29988 5' -59.2 NC_006273.1 + 74180 0.67 0.845799
Target:  5'- cUACGUGGCGCgccGGCGA-GACGagcuugaCGGg -3'
miRNA:   3'- cGUGUACCGCGa--CCGCUgCUGC-------GCCa -5'
29988 5' -59.2 NC_006273.1 + 149554 0.67 0.838877
Target:  5'- -aGCGgcGGCGgUGGUaguggcgugGGCGACGCGGa -3'
miRNA:   3'- cgUGUa-CCGCgACCG---------CUGCUGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 112239 0.67 0.838877
Target:  5'- uGCGCGgcgGGgGCUGGCGcgAgGACGUGc- -3'
miRNA:   3'- -CGUGUa--CCgCGACCGC--UgCUGCGCca -5'
29988 5' -59.2 NC_006273.1 + 81797 0.67 0.838877
Target:  5'- gGCACGUGcuUGCUGaCGAagccgaaGACGCGGUa -3'
miRNA:   3'- -CGUGUACc-GCGACcGCUg------CUGCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 27402 0.67 0.831024
Target:  5'- aUACAgGGCGaaaGGCaccccGACGACGUGGUa -3'
miRNA:   3'- cGUGUaCCGCga-CCG-----CUGCUGCGCCA- -5'
29988 5' -59.2 NC_006273.1 + 120940 0.67 0.831024
Target:  5'- cGC-CAUGGCGCcGccgcCGGUGACGCGGg -3'
miRNA:   3'- -CGuGUACCGCGaCc---GCUGCUGCGCCa -5'
29988 5' -59.2 NC_006273.1 + 30663 0.67 0.831024
Target:  5'- cGCGCcgGGCgGCUuccuGCGGcCGGCcGCGGUg -3'
miRNA:   3'- -CGUGuaCCG-CGAc---CGCU-GCUG-CGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.