miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29989 3' -51.3 NC_006273.1 + 159505 0.66 0.997727
Target:  5'- cGCGUcUCCCAAuGGcUAGGCGUUCUUu -3'
miRNA:   3'- aUGCAcAGGGUU-CCuAUUUGCAGGGA- -5'
29989 3' -51.3 NC_006273.1 + 132381 0.66 0.996284
Target:  5'- gGCGUuucGUCCgGAGGA---GCGUCCg- -3'
miRNA:   3'- aUGCA---CAGGgUUCCUauuUGCAGGga -5'
29989 3' -51.3 NC_006273.1 + 139817 0.67 0.995662
Target:  5'- -cCGggGUCCgCcGGGGUuucGACGUCCCUg -3'
miRNA:   3'- auGCa-CAGG-GuUCCUAu--UUGCAGGGA- -5'
29989 3' -51.3 NC_006273.1 + 114031 0.67 0.994162
Target:  5'- cACGUGUCgCUcgcugcauaAAGGGcGAACGUCCUc -3'
miRNA:   3'- aUGCACAG-GG---------UUCCUaUUUGCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 3458 0.67 0.993269
Target:  5'- aGCGUGUCCgCcgccGGGAaGGugGUCUCUu -3'
miRNA:   3'- aUGCACAGG-Gu---UCCUaUUugCAGGGA- -5'
29989 3' -51.3 NC_006273.1 + 167441 0.67 0.99227
Target:  5'- gGCGUGUUgCAGGGccugcuGCGUCUCa -3'
miRNA:   3'- aUGCACAGgGUUCCuauu--UGCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 122761 0.68 0.991156
Target:  5'- ----cGUCCC-AGGAgc-GCGUCCCg -3'
miRNA:   3'- augcaCAGGGuUCCUauuUGCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 148744 0.68 0.98992
Target:  5'- gGCGUG-CCCGAGGAUGAguggcAgGUCUUc -3'
miRNA:   3'- aUGCACaGGGUUCCUAUU-----UgCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 49823 0.68 0.988553
Target:  5'- aACGUG-CCCGAGc--GAACGUCCUc -3'
miRNA:   3'- aUGCACaGGGUUCcuaUUUGCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 181401 0.68 0.988553
Target:  5'- -uCGUGUUCCAGGGuUGGGCGUaCgCCg -3'
miRNA:   3'- auGCACAGGGUUCCuAUUUGCA-G-GGa -5'
29989 3' -51.3 NC_006273.1 + 220888 0.68 0.98539
Target:  5'- cUugGgggGaCCCAAGGAcagacAGCGUCCCUc -3'
miRNA:   3'- -AugCa--CaGGGUUCCUau---UUGCAGGGA- -5'
29989 3' -51.3 NC_006273.1 + 103996 0.69 0.983577
Target:  5'- gGCGUG-CgUggGGAUGAugGUgCCCa -3'
miRNA:   3'- aUGCACaGgGuuCCUAUUugCA-GGGa -5'
29989 3' -51.3 NC_006273.1 + 31357 0.69 0.977116
Target:  5'- -gUGUGUaCCUGAGGuggauACGUCCCUg -3'
miRNA:   3'- auGCACA-GGGUUCCuauu-UGCAGGGA- -5'
29989 3' -51.3 NC_006273.1 + 50056 0.69 0.971877
Target:  5'- aGCGUGUCCCGuAGGu----CGUCCa- -3'
miRNA:   3'- aUGCACAGGGU-UCCuauuuGCAGGga -5'
29989 3' -51.3 NC_006273.1 + 195240 0.7 0.967728
Target:  5'- uUGCGUGUgucCCCAAGGAcccgcgcugcCGUCCCc -3'
miRNA:   3'- -AUGCACA---GGGUUCCUauuu------GCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 347 0.7 0.967728
Target:  5'- uUGCGUGUgucCCCAAGGAcccgcgcugcCGUCCCc -3'
miRNA:   3'- -AUGCACA---GGGUUCCUauuu------GCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 235178 0.7 0.967728
Target:  5'- uUGCGUGUgucCCCAAGGAcccgcgcugcCGUCCCc -3'
miRNA:   3'- -AUGCACA---GGGUUCCUauuu------GCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 15971 0.74 0.862061
Target:  5'- cUACGUGUCCgggccaCAGGGAggGAACGUuaCCCUg -3'
miRNA:   3'- -AUGCACAGG------GUUCCUa-UUUGCA--GGGA- -5'
29989 3' -51.3 NC_006273.1 + 128053 0.74 0.838136
Target:  5'- gGCGgGUUCCGAGGGUGGuccGCGUUCCg -3'
miRNA:   3'- aUGCaCAGGGUUCCUAUU---UGCAGGGa -5'
29989 3' -51.3 NC_006273.1 + 2266 1.07 0.015747
Target:  5'- uUACGUGUCCCAAGGAUAAACGUCCCUg -3'
miRNA:   3'- -AUGCACAGGGUUCCUAUUUGCAGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.