miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29997 3' -65.2 NC_006273.1 + 76644 0.66 0.692588
Target:  5'- uGGCGcGACC-CGACCCGGUauuuugccacguccuGcGUcagGCGGg -3'
miRNA:   3'- gCCGC-CUGGcGCUGGGCCG---------------C-CA---CGCC- -5'
29997 3' -65.2 NC_006273.1 + 136111 0.66 0.688967
Target:  5'- gCGGCGaucgcgcuuuuGACCGCGAgC-GGCGGacuuggcaGCGGg -3'
miRNA:   3'- -GCCGC-----------CUGGCGCUgGgCCGCCa-------CGCC- -5'
29997 3' -65.2 NC_006273.1 + 197211 0.66 0.688967
Target:  5'- uGGaCGGGCaCGUGuACCCGcUGGcgGCGGa -3'
miRNA:   3'- gCC-GCCUG-GCGC-UGGGCcGCCa-CGCC- -5'
29997 3' -65.2 NC_006273.1 + 44808 0.66 0.688967
Target:  5'- cCGGCGGA-CGUGACUCGGCaGccGCu- -3'
miRNA:   3'- -GCCGCCUgGCGCUGGGCCGcCa-CGcc -5'
29997 3' -65.2 NC_006273.1 + 2318 0.66 0.688967
Target:  5'- uGGaCGGGCaCGUGuACCCGcUGGcgGCGGa -3'
miRNA:   3'- gCC-GCCUG-GCGC-UGGGCcGCCa-CGCC- -5'
29997 3' -65.2 NC_006273.1 + 173257 0.66 0.688967
Target:  5'- cCGGCGGACCaGCGGCUgcUGGCccc-CGGa -3'
miRNA:   3'- -GCCGCCUGG-CGCUGG--GCCGccacGCC- -5'
29997 3' -65.2 NC_006273.1 + 147814 0.66 0.688061
Target:  5'- uGGCGG-CCGUGccgaGCCgCGGCuucacacguucguGGUGCGcGg -3'
miRNA:   3'- gCCGCCuGGCGC----UGG-GCCG-------------CCACGC-C- -5'
29997 3' -65.2 NC_006273.1 + 34718 0.66 0.679889
Target:  5'- cCGGCGG-CCGCcaGAUCCucgGGC-GUGCGa -3'
miRNA:   3'- -GCCGCCuGGCG--CUGGG---CCGcCACGCc -5'
29997 3' -65.2 NC_006273.1 + 162993 0.66 0.678979
Target:  5'- aGGCucGACgGCGGCagcugCGGCGGUaggacacGCGGg -3'
miRNA:   3'- gCCGc-CUGgCGCUGg----GCCGCCA-------CGCC- -5'
29997 3' -65.2 NC_006273.1 + 165703 0.66 0.674427
Target:  5'- uCGGCGGccgucagcuccuGCUGCGugucgaugcgcugguGCCaGGCGGUGCu- -3'
miRNA:   3'- -GCCGCC------------UGGCGC---------------UGGgCCGCCACGcc -5'
29997 3' -65.2 NC_006273.1 + 101750 0.66 0.67078
Target:  5'- aCGGCGGucGCCgGCGGCaUgGGCGcGUcggGCGGu -3'
miRNA:   3'- -GCCGCC--UGG-CGCUG-GgCCGC-CA---CGCC- -5'
29997 3' -65.2 NC_006273.1 + 188046 0.66 0.67078
Target:  5'- gGGCGauGACaGCG--CCGGCGGcGCGGg -3'
miRNA:   3'- gCCGC--CUGgCGCugGGCCGCCaCGCC- -5'
29997 3' -65.2 NC_006273.1 + 145553 0.66 0.67078
Target:  5'- aCGGgguucCGGGCgGCgGugCUGGCGGggGUGGu -3'
miRNA:   3'- -GCC-----GCCUGgCG-CugGGCCGCCa-CGCC- -5'
29997 3' -65.2 NC_006273.1 + 157367 0.66 0.67078
Target:  5'- uGGUgGGGCUGCGucGCCugcgaCGGCGG-GUGGa -3'
miRNA:   3'- gCCG-CCUGGCGC--UGG-----GCCGCCaCGCC- -5'
29997 3' -65.2 NC_006273.1 + 215421 0.66 0.67078
Target:  5'- aCGGCGuGauGCUGUGAUgaCGGCGGUcucaacggccGCGGg -3'
miRNA:   3'- -GCCGC-C--UGGCGCUGg-GCCGCCA----------CGCC- -5'
29997 3' -65.2 NC_006273.1 + 31036 0.66 0.669867
Target:  5'- aCGaGCGGAgCGCGACCCauuucaaGGuCGGcGCa- -3'
miRNA:   3'- -GC-CGCCUgGCGCUGGG-------CC-GCCaCGcc -5'
29997 3' -65.2 NC_006273.1 + 40503 0.66 0.664388
Target:  5'- cCGGCugcugccGGACagGCGACCCGGCgcgcuaccgcucacgGGgaccgaggGCGGu -3'
miRNA:   3'- -GCCG-------CCUGg-CGCUGGGCCG---------------CCa-------CGCC- -5'
29997 3' -65.2 NC_006273.1 + 131866 0.66 0.661645
Target:  5'- aCGGCGG-CCGCaucgacggcacGcACCUGGCGG-GCu- -3'
miRNA:   3'- -GCCGCCuGGCG-----------C-UGGGCCGCCaCGcc -5'
29997 3' -65.2 NC_006273.1 + 160300 0.66 0.661645
Target:  5'- uGGUGGACgG-GGCCgGGCuGGU-CGGg -3'
miRNA:   3'- gCCGCCUGgCgCUGGgCCG-CCAcGCC- -5'
29997 3' -65.2 NC_006273.1 + 26114 0.66 0.661645
Target:  5'- -uGCGGAUaCGCcGCCgGGCGcUGCGGu -3'
miRNA:   3'- gcCGCCUG-GCGcUGGgCCGCcACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.