miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29999 3' -59.9 NC_006273.1 + 38063 0.66 0.878711
Target:  5'- cGCGguCCAgCUCGGGCagcaGCcgCCgcGCGGCCu -3'
miRNA:   3'- -CGC--GGU-GAGCCUGg---CGa-GGa-CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 179232 0.66 0.878711
Target:  5'- gGCGuucggacgaccuCCGCgUCGGucGCCGcCUCC-GCGGCCc -3'
miRNA:   3'- -CGC------------GGUG-AGCC--UGGC-GAGGaCGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 177619 0.66 0.878711
Target:  5'- uCGCuCGCUCGcGcCCGCUCCUuaGUGAg- -3'
miRNA:   3'- cGCG-GUGAGC-CuGGCGAGGA--CGCUgg -5'
29999 3' -59.9 NC_006273.1 + 118701 0.66 0.878711
Target:  5'- cGCGCgaaaccaGCUCGGACUuuUCCgaagcGCGGCg -3'
miRNA:   3'- -CGCGg------UGAGCCUGGcgAGGa----CGCUGg -5'
29999 3' -59.9 NC_006273.1 + 202166 0.66 0.878711
Target:  5'- gGgGCC-CUCGGugCGCUaCCg--GGCCc -3'
miRNA:   3'- -CgCGGuGAGCCugGCGA-GGacgCUGG- -5'
29999 3' -59.9 NC_006273.1 + 189461 0.66 0.878711
Target:  5'- uCGCgACgaagucucgUCGGAUCGCU--UGCGGCCu -3'
miRNA:   3'- cGCGgUG---------AGCCUGGCGAggACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 232956 0.66 0.878711
Target:  5'- cGCGguCCAgCUCGGGCagcaGCcgCCgcGCGGCCu -3'
miRNA:   3'- -CGC--GGU-GAGCCUGg---CGa-GGa-CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 198231 0.66 0.878711
Target:  5'- cGCGCgACUUGG-CCGaccugugCgUGCGACg -3'
miRNA:   3'- -CGCGgUGAGCCuGGCga-----GgACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 145161 0.66 0.87195
Target:  5'- cGCGCCGCUCaaGGACgaaCGCUa-UG-GGCCg -3'
miRNA:   3'- -CGCGGUGAG--CCUG---GCGAggACgCUGG- -5'
29999 3' -59.9 NC_006273.1 + 7982 0.66 0.87195
Target:  5'- cGUGUCA-UCGGAagaauaccacCCGCUCUcaUGCGGCa -3'
miRNA:   3'- -CGCGGUgAGCCU----------GGCGAGG--ACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 108304 0.66 0.87195
Target:  5'- cCGCCAUgaccaacaACCGggCCUGCGGCCu -3'
miRNA:   3'- cGCGGUGagcc----UGGCgaGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 109300 0.66 0.87195
Target:  5'- cCGgCACgacgaggUGGACCGCuggaUCCggcacGCGGCCg -3'
miRNA:   3'- cGCgGUGa------GCCUGGCG----AGGa----CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 163325 0.66 0.87195
Target:  5'- aCGCCgaGCUCGuacACUGCUCgcuCUGCGGCa -3'
miRNA:   3'- cGCGG--UGAGCc--UGGCGAG---GACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 69724 0.66 0.865704
Target:  5'- cCGCCGCcCGGAUUGCggcuucucuuucucaCCUG-GACCg -3'
miRNA:   3'- cGCGGUGaGCCUGGCGa--------------GGACgCUGG- -5'
29999 3' -59.9 NC_006273.1 + 141129 0.66 0.865001
Target:  5'- gGCGCaGCgugCGGACCGCagCa-CGGCCg -3'
miRNA:   3'- -CGCGgUGa--GCCUGGCGagGacGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 113292 0.66 0.865001
Target:  5'- uGCuGCCGCaCGaGACgCGaCUCCUGCaGACg -3'
miRNA:   3'- -CG-CGGUGaGC-CUG-GC-GAGGACG-CUGg -5'
29999 3' -59.9 NC_006273.1 + 135072 0.66 0.865001
Target:  5'- cGCGCCAUggccuacGugUGCUCCUucucgcgcGUGGCCg -3'
miRNA:   3'- -CGCGGUGagc----CugGCGAGGA--------CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 16090 0.66 0.865001
Target:  5'- uUGUCGCUCGGcauuCCGCacaacugguUCCugcaggUGCGGCCc -3'
miRNA:   3'- cGCGGUGAGCCu---GGCG---------AGG------ACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 115449 0.66 0.865001
Target:  5'- cGCuGCCGCU-GGACCGCgugcCCguuaGCgGACUg -3'
miRNA:   3'- -CG-CGGUGAgCCUGGCGa---GGa---CG-CUGG- -5'
29999 3' -59.9 NC_006273.1 + 129549 0.66 0.865001
Target:  5'- cGCGCCGcCUCGGcugugaCGCUCUaauagucgucgGCGGCUc -3'
miRNA:   3'- -CGCGGU-GAGCCug----GCGAGGa----------CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.