miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29999 3' -59.9 NC_006273.1 + 7982 0.66 0.87195
Target:  5'- cGUGUCA-UCGGAagaauaccacCCGCUCUcaUGCGGCa -3'
miRNA:   3'- -CGCGGUgAGCCU----------GGCGAGG--ACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 142358 0.66 0.850555
Target:  5'- aGCGCCguggcaucggGCcCGGGCCGCguUCC-GCaGCCg -3'
miRNA:   3'- -CGCGG----------UGaGCCUGGCG--AGGaCGcUGG- -5'
29999 3' -59.9 NC_006273.1 + 42213 0.66 0.843069
Target:  5'- cCGCCGaaCGGGCagcguggGCUUCgGCGGCCg -3'
miRNA:   3'- cGCGGUgaGCCUGg------CGAGGaCGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 129549 0.66 0.865001
Target:  5'- cGCGCCGcCUCGGcugugaCGCUCUaauagucgucgGCGGCUc -3'
miRNA:   3'- -CGCGGU-GAGCCug----GCGAGGa----------CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 231191 0.66 0.850555
Target:  5'- cGCGCCugUCGcGAUC-CUCaugGCGAggaCCg -3'
miRNA:   3'- -CGCGGugAGC-CUGGcGAGga-CGCU---GG- -5'
29999 3' -59.9 NC_006273.1 + 179734 0.66 0.846084
Target:  5'- cGCGCCGCUgCGcGAagaacugggcuauguCCGCUUCga-GACCg -3'
miRNA:   3'- -CGCGGUGA-GC-CU---------------GGCGAGGacgCUGG- -5'
29999 3' -59.9 NC_006273.1 + 205687 0.66 0.857868
Target:  5'- aGCGCUACUUucGcCCGCUgUUGCGcGCCu -3'
miRNA:   3'- -CGCGGUGAGc-CuGGCGAgGACGC-UGG- -5'
29999 3' -59.9 NC_006273.1 + 84813 0.66 0.842312
Target:  5'- gGCaGCCAaggUCGGuCCGCUCcCUGaaggcacccgagaCGGCCg -3'
miRNA:   3'- -CG-CGGUg--AGCCuGGCGAG-GAC-------------GCUGG- -5'
29999 3' -59.9 NC_006273.1 + 196216 0.66 0.842312
Target:  5'- aCGCCGCUCGGAgcaCCGCcgcagcccggcuuUCCcgGCGuCg -3'
miRNA:   3'- cGCGGUGAGCCU---GGCG-------------AGGa-CGCuGg -5'
29999 3' -59.9 NC_006273.1 + 117211 0.66 0.850555
Target:  5'- -aGCCGCagUCaGGCCGCcacgCCgGCGGCUg -3'
miRNA:   3'- cgCGGUG--AGcCUGGCGa---GGaCGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 43908 0.66 0.842312
Target:  5'- cGCGCgCAgUCGuACCGCUCCaccuauauaauuuUGCuauuGACCu -3'
miRNA:   3'- -CGCG-GUgAGCcUGGCGAGG-------------ACG----CUGG- -5'
29999 3' -59.9 NC_006273.1 + 189461 0.66 0.878711
Target:  5'- uCGCgACgaagucucgUCGGAUCGCU--UGCGGCCu -3'
miRNA:   3'- cGCGgUG---------AGCCUGGCGAggACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 202037 0.66 0.850555
Target:  5'- cGCGCCGCa-GGAUCGCac--GCGGCUg -3'
miRNA:   3'- -CGCGGUGagCCUGGCGaggaCGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 132088 0.66 0.857868
Target:  5'- aGC-CCGCgcuGGcACCGCUgCUggaGCGACCg -3'
miRNA:   3'- -CGcGGUGag-CC-UGGCGAgGA---CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 177619 0.66 0.878711
Target:  5'- uCGCuCGCUCGcGcCCGCUCCUuaGUGAg- -3'
miRNA:   3'- cGCG-GUGAGC-CuGGCGAGGA--CGCUgg -5'
29999 3' -59.9 NC_006273.1 + 232956 0.66 0.878711
Target:  5'- cGCGguCCAgCUCGGGCagcaGCcgCCgcGCGGCCu -3'
miRNA:   3'- -CGC--GGU-GAGCCUGg---CGa-GGa-CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 50185 0.66 0.850555
Target:  5'- uGUGCCGC-CGGGagUCGCUCCgaacucugccGUGGCUg -3'
miRNA:   3'- -CGCGGUGaGCCU--GGCGAGGa---------CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 82595 0.66 0.860743
Target:  5'- uGCGCCagagcgugcaaacggGCgugcUGGGCgCGCUCC-GCGACa -3'
miRNA:   3'- -CGCGG---------------UGa---GCCUG-GCGAGGaCGCUGg -5'
29999 3' -59.9 NC_006273.1 + 16090 0.66 0.865001
Target:  5'- uUGUCGCUCGGcauuCCGCacaacugguUCCugcaggUGCGGCCc -3'
miRNA:   3'- cGCGGUGAGCCu---GGCG---------AGG------ACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 196747 0.66 0.857868
Target:  5'- gGCGCCGCacccCGcG-UCGCUgCUGaCGGCCg -3'
miRNA:   3'- -CGCGGUGa---GC-CuGGCGAgGAC-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.