miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29999 3' -59.9 NC_006273.1 + 21695 1.12 0.001433
Target:  5'- uGCGCCACUCGGACCGCUCCUGCGACCu -3'
miRNA:   3'- -CGCGGUGAGCCUGGCGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 40530 0.78 0.270218
Target:  5'- gGCGCCGCaagCGcuccGCCGCUUCUGCGGCUu -3'
miRNA:   3'- -CGCGGUGa--GCc---UGGCGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 592 0.78 0.270218
Target:  5'- gGCGCCGCaagCGcuccGCCGCUUCUGCGGCUu -3'
miRNA:   3'- -CGCGGUGa--GCc---UGGCGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 112616 0.78 0.27626
Target:  5'- gGCGCCACguucccacgGGACgCGCUCCUGgGACg -3'
miRNA:   3'- -CGCGGUGag-------CCUG-GCGAGGACgCUGg -5'
29999 3' -59.9 NC_006273.1 + 48819 0.77 0.295033
Target:  5'- gGCuGUCACacaGGGCCugaaGCUCCUGCGGCCa -3'
miRNA:   3'- -CG-CGGUGag-CCUGG----CGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 154221 0.77 0.308091
Target:  5'- -gGCCuACgUGGACCGCUUCgUGCGGCCg -3'
miRNA:   3'- cgCGG-UGaGCCUGGCGAGG-ACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 117510 0.76 0.328498
Target:  5'- cCGCCGCUgcccccgugaCGGuGCUGCUUCUGCGACUg -3'
miRNA:   3'- cGCGGUGA----------GCC-UGGCGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 14102 0.75 0.386905
Target:  5'- -aGUgGCUCGGACCGCcggcuguUUCUGCGcACCg -3'
miRNA:   3'- cgCGgUGAGCCUGGCG-------AGGACGC-UGG- -5'
29999 3' -59.9 NC_006273.1 + 177679 0.75 0.403541
Target:  5'- cGCGCCuCUCGGAgCCGCcgacgcuggCgCUGCGGCUg -3'
miRNA:   3'- -CGCGGuGAGCCU-GGCGa--------G-GACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 49487 0.74 0.411621
Target:  5'- uCGCUgcGCUUGGAUccagCGCUgCUGCGACCg -3'
miRNA:   3'- cGCGG--UGAGCCUG----GCGAgGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 109795 0.74 0.411621
Target:  5'- cGCGCCAa--GGACUGCaUCCgcgGCGACa -3'
miRNA:   3'- -CGCGGUgagCCUGGCG-AGGa--CGCUGg -5'
29999 3' -59.9 NC_006273.1 + 30663 0.74 0.436448
Target:  5'- cGCGCC----GGGCgGCuUCCUGCGGCCg -3'
miRNA:   3'- -CGCGGugagCCUGgCG-AGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 22276 0.74 0.444913
Target:  5'- cCGCCG-UCGGugCGCUCauCUGCGGCa -3'
miRNA:   3'- cGCGGUgAGCCugGCGAG--GACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 60003 0.74 0.45347
Target:  5'- cGCGCCACagcgcguuccugUCGGACggcaGCUCCcGCG-CCg -3'
miRNA:   3'- -CGCGGUG------------AGCCUGg---CGAGGaCGCuGG- -5'
29999 3' -59.9 NC_006273.1 + 68060 0.73 0.479661
Target:  5'- aGCGCCGC-CGuGGCCGC-CgCUGCcGCCg -3'
miRNA:   3'- -CGCGGUGaGC-CUGGCGaG-GACGcUGG- -5'
29999 3' -59.9 NC_006273.1 + 169570 0.73 0.479661
Target:  5'- uGCGCCGCcgauugCGGACCGCagggGCGACg -3'
miRNA:   3'- -CGCGGUGa-----GCCUGGCGaggaCGCUGg -5'
29999 3' -59.9 NC_006273.1 + 38681 0.73 0.479661
Target:  5'- aGCGCUACgcgacgCGGACCGCgacaaCUaCGGCCg -3'
miRNA:   3'- -CGCGGUGa-----GCCUGGCGag---GAcGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 153791 0.73 0.497527
Target:  5'- cCGCCGCggcCGcGGCCGCcgCCUGCGAggaCCu -3'
miRNA:   3'- cGCGGUGa--GC-CUGGCGa-GGACGCU---GG- -5'
29999 3' -59.9 NC_006273.1 + 14355 0.73 0.506571
Target:  5'- uGUGCCGC-CGGAgcuccCCGCgcugCCUGUGGCg -3'
miRNA:   3'- -CGCGGUGaGCCU-----GGCGa---GGACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 198103 0.72 0.515685
Target:  5'- cCGUCGCaaGGGCUGCUCg-GCGGCCa -3'
miRNA:   3'- cGCGGUGagCCUGGCGAGgaCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.