miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29999 3' -59.9 NC_006273.1 + 592 0.78 0.270218
Target:  5'- gGCGCCGCaagCGcuccGCCGCUUCUGCGGCUu -3'
miRNA:   3'- -CGCGGUGa--GCc---UGGCGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 1272 0.7 0.667104
Target:  5'- aGCGCgACgCGGGCaCGCUgCUGCcgcucggacGGCCg -3'
miRNA:   3'- -CGCGgUGaGCCUG-GCGAgGACG---------CUGG- -5'
29999 3' -59.9 NC_006273.1 + 1382 0.67 0.803243
Target:  5'- uCGCCGCgggacgcgUGGAUCGUgCUggugGCGACCg -3'
miRNA:   3'- cGCGGUGa-------GCCUGGCGaGGa---CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 1855 0.66 0.857868
Target:  5'- gGCGCCGCacccCGcG-UCGCUgCUGaCGGCCg -3'
miRNA:   3'- -CGCGGUGa---GC-CuGGCGAgGAC-GCUGG- -5'
29999 3' -59.9 NC_006273.1 + 2411 0.67 0.811507
Target:  5'- cCGCCGC-CGaGGCCGCgcg-GCGGCUg -3'
miRNA:   3'- cGCGGUGaGC-CUGGCGaggaCGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 7982 0.66 0.87195
Target:  5'- cGUGUCA-UCGGAagaauaccacCCGCUCUcaUGCGGCa -3'
miRNA:   3'- -CGCGGUgAGCCU----------GGCGAGG--ACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 11845 0.67 0.811507
Target:  5'- aGUGCCGCUCcacGCCGCggcaCCaUGCG-CCa -3'
miRNA:   3'- -CGCGGUGAGcc-UGGCGa---GG-ACGCuGG- -5'
29999 3' -59.9 NC_006273.1 + 12368 0.68 0.7689
Target:  5'- uGCGCgACaCGGACUGUUgcaCUGCGagGCCa -3'
miRNA:   3'- -CGCGgUGaGCCUGGCGAg--GACGC--UGG- -5'
29999 3' -59.9 NC_006273.1 + 13922 0.68 0.760029
Target:  5'- uGUGCCugucauccACUUGGAgaGCUCCcGCGGuCCg -3'
miRNA:   3'- -CGCGG--------UGAGCCUggCGAGGaCGCU-GG- -5'
29999 3' -59.9 NC_006273.1 + 14102 0.75 0.386905
Target:  5'- -aGUgGCUCGGACCGCcggcuguUUCUGCGcACCg -3'
miRNA:   3'- cgCGgUGAGCCUGGCG-------AGGACGC-UGG- -5'
29999 3' -59.9 NC_006273.1 + 14355 0.73 0.506571
Target:  5'- uGUGCCGC-CGGAgcuccCCGCgcugCCUGUGGCg -3'
miRNA:   3'- -CGCGGUGaGCCU-----GGCGa---GGACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 16090 0.66 0.865001
Target:  5'- uUGUCGCUCGGcauuCCGCacaacugguUCCugcaggUGCGGCCc -3'
miRNA:   3'- cGCGGUGAGCCu---GGCG---------AGG------ACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 18925 0.7 0.657554
Target:  5'- aGCGCU-CU-GGACUgGUUUCUGCGACCu -3'
miRNA:   3'- -CGCGGuGAgCCUGG-CGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 19897 0.68 0.741997
Target:  5'- cCGCCGCUuuggucUGGAUCGCUCCcGCauuuGCCc -3'
miRNA:   3'- cGCGGUGA------GCCUGGCGAGGaCGc---UGG- -5'
29999 3' -59.9 NC_006273.1 + 21695 1.12 0.001433
Target:  5'- uGCGCCACUCGGACCGCUCCUGCGACCu -3'
miRNA:   3'- -CGCGGUGAGCCUGGCGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 21842 0.69 0.732851
Target:  5'- uGCGCUacggcGCUgGGACUuugGCUgCUGCgGGCCg -3'
miRNA:   3'- -CGCGG-----UGAgCCUGG---CGAgGACG-CUGG- -5'
29999 3' -59.9 NC_006273.1 + 22276 0.74 0.444913
Target:  5'- cCGCCG-UCGGugCGCUCauCUGCGGCa -3'
miRNA:   3'- cGCGGUgAGCCugGCGAG--GACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 23646 0.69 0.704983
Target:  5'- gGCGCCGCaaacaucuaccUCGacguCgCGCUCCgUGCGGCCc -3'
miRNA:   3'- -CGCGGUG-----------AGCcu--G-GCGAGG-ACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 25971 0.67 0.803243
Target:  5'- aCGCCGCU-GGAacgcgCGCUUUUgGCGGCCg -3'
miRNA:   3'- cGCGGUGAgCCUg----GCGAGGA-CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 26319 0.67 0.811507
Target:  5'- -gGCUACgUCGGACCGCgaucgUCaUGCGugUc -3'
miRNA:   3'- cgCGGUG-AGCCUGGCGa----GG-ACGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.