miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29999 3' -59.9 NC_006273.1 + 196165 0.7 0.667104
Target:  5'- aGCGCgACgCGGGCaCGCUgCUGCcgcucggacGGCCg -3'
miRNA:   3'- -CGCGgUGaGCCUG-GCGAgGACG---------CUGG- -5'
29999 3' -59.9 NC_006273.1 + 61888 0.71 0.571591
Target:  5'- uUGCacgaacaGCU-GGACCGCuUCCUGCGACa -3'
miRNA:   3'- cGCGg------UGAgCCUGGCG-AGGACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 151271 0.71 0.609672
Target:  5'- gGCGCgGCgCGGACCuuucaagcGUUCCUG-GGCCg -3'
miRNA:   3'- -CGCGgUGaGCCUGG--------CGAGGACgCUGG- -5'
29999 3' -59.9 NC_006273.1 + 104633 0.71 0.619245
Target:  5'- uGUGCCG-UCGcaaaGCCGCgCCUGUGGCCg -3'
miRNA:   3'- -CGCGGUgAGCc---UGGCGaGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 33330 0.7 0.627867
Target:  5'- aGCGCCgagcugaACUgCGGcaGCCGCgugcgaUCCUGCGGCg -3'
miRNA:   3'- -CGCGG-------UGA-GCC--UGGCG------AGGACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 46726 0.7 0.628825
Target:  5'- cGUGCUguACUCGGAgCCGCUUaagacGCGGCUg -3'
miRNA:   3'- -CGCGG--UGAGCCU-GGCGAGga---CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 144420 0.7 0.628825
Target:  5'- gGCGCCGCggcggCGGACgGUUCggGUGGCg -3'
miRNA:   3'- -CGCGGUGa----GCCUGgCGAGgaCGCUGg -5'
29999 3' -59.9 NC_006273.1 + 191494 0.7 0.647029
Target:  5'- cCGCCGCUUGGACC-UUCgUGCGuugucucGCCu -3'
miRNA:   3'- cGCGGUGAGCCUGGcGAGgACGC-------UGG- -5'
29999 3' -59.9 NC_006273.1 + 46163 0.7 0.647987
Target:  5'- uGCGacaCGCUaGcGACCGC-CCUGCGGCa -3'
miRNA:   3'- -CGCg--GUGAgC-CUGGCGaGGACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 122255 0.72 0.56215
Target:  5'- cGCGCC-CUCuGcGGCCGCcgCCUuacauaggcagGCGACCa -3'
miRNA:   3'- -CGCGGuGAG-C-CUGGCGa-GGA-----------CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 56113 0.72 0.55369
Target:  5'- gGCGCCGCcggauuucgucgaaaCGGGCCGCggaggcgGCGACCg -3'
miRNA:   3'- -CGCGGUGa--------------GCCUGGCGagga---CGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 219268 0.72 0.534105
Target:  5'- gGUGCUGC-CGGGCCGCaCCUGCaggaACCa -3'
miRNA:   3'- -CGCGGUGaGCCUGGCGaGGACGc---UGG- -5'
29999 3' -59.9 NC_006273.1 + 592 0.78 0.270218
Target:  5'- gGCGCCGCaagCGcuccGCCGCUUCUGCGGCUu -3'
miRNA:   3'- -CGCGGUGa--GCc---UGGCGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 48819 0.77 0.295033
Target:  5'- gGCuGUCACacaGGGCCugaaGCUCCUGCGGCCa -3'
miRNA:   3'- -CG-CGGUGag-CCUGG----CGAGGACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 154221 0.77 0.308091
Target:  5'- -gGCCuACgUGGACCGCUUCgUGCGGCCg -3'
miRNA:   3'- cgCGG-UGaGCCUGGCGAGG-ACGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 22276 0.74 0.444913
Target:  5'- cCGCCG-UCGGugCGCUCauCUGCGGCa -3'
miRNA:   3'- cGCGGUgAGCCugGCGAG--GACGCUGg -5'
29999 3' -59.9 NC_006273.1 + 60003 0.74 0.45347
Target:  5'- cGCGCCACagcgcguuccugUCGGACggcaGCUCCcGCG-CCg -3'
miRNA:   3'- -CGCGGUG------------AGCCUGg---CGAGGaCGCuGG- -5'
29999 3' -59.9 NC_006273.1 + 38681 0.73 0.479661
Target:  5'- aGCGCUACgcgacgCGGACCGCgacaaCUaCGGCCg -3'
miRNA:   3'- -CGCGGUGa-----GCCUGGCGag---GAcGCUGG- -5'
29999 3' -59.9 NC_006273.1 + 153791 0.73 0.497527
Target:  5'- cCGCCGCggcCGcGGCCGCcgCCUGCGAggaCCu -3'
miRNA:   3'- cGCGGUGa--GC-CUGGCGa-GGACGCU---GG- -5'
29999 3' -59.9 NC_006273.1 + 234301 0.72 0.524864
Target:  5'- cCGCUACUCGGAggggCGC-CCgGCGGCCc -3'
miRNA:   3'- cGCGGUGAGCCUg---GCGaGGaCGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.