miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29999 5' -56 NC_006273.1 + 206662 0.66 0.966442
Target:  5'- gGCGC-CuCGGGCGCcauGUACCUaUGGAc -3'
miRNA:   3'- -CGCGaGuGUCUGCGc--CAUGGAcACCU- -5'
29999 5' -56 NC_006273.1 + 92211 0.66 0.963274
Target:  5'- cGCGCcUACGGGCGCcaaACCUGUGu- -3'
miRNA:   3'- -CGCGaGUGUCUGCGccaUGGACACcu -5'
29999 5' -56 NC_006273.1 + 192004 0.66 0.963274
Target:  5'- gGCGCUCACcgugguguuguGGAUGaUGGUGuCCaucGUGGAc -3'
miRNA:   3'- -CGCGAGUG-----------UCUGC-GCCAU-GGa--CACCU- -5'
29999 5' -56 NC_006273.1 + 174132 0.66 0.956325
Target:  5'- cGCGCU-GCAGugGCuGG-ACCUG-GGc -3'
miRNA:   3'- -CGCGAgUGUCugCG-CCaUGGACaCCu -5'
29999 5' -56 NC_006273.1 + 114086 0.66 0.954078
Target:  5'- gGCGagaGCGGGCgGCGGUGguggguauguccccuUCUGUGGAg -3'
miRNA:   3'- -CGCgagUGUCUG-CGCCAU---------------GGACACCU- -5'
29999 5' -56 NC_006273.1 + 179958 0.66 0.952536
Target:  5'- cGUGCUCGCuGAacgugcUGCaGGUAUUUGUGGu -3'
miRNA:   3'- -CGCGAGUGuCU------GCG-CCAUGGACACCu -5'
29999 5' -56 NC_006273.1 + 32083 0.66 0.952536
Target:  5'- aGCGCUUACuaucUGCGGUggcacGCCUGUGu- -3'
miRNA:   3'- -CGCGAGUGucu-GCGCCA-----UGGACACcu -5'
29999 5' -56 NC_006273.1 + 15053 0.66 0.952536
Target:  5'- uGCGCUCACcGAgGUGGagaGCCgucguuggugGUGGGc -3'
miRNA:   3'- -CGCGAGUGuCUgCGCCa--UGGa---------CACCU- -5'
29999 5' -56 NC_006273.1 + 188987 0.66 0.948942
Target:  5'- cGUGCUCAgGuucuuacgcGGCGCGGguaucggcgucggggGCCUGUGcGAc -3'
miRNA:   3'- -CGCGAGUgU---------CUGCGCCa--------------UGGACAC-CU- -5'
29999 5' -56 NC_006273.1 + 47455 0.66 0.948532
Target:  5'- cGCGCUgCugccagaauggAUGGAUGCGGUACaUGUGGc -3'
miRNA:   3'- -CGCGA-G-----------UGUCUGCGCCAUGgACACCu -5'
29999 5' -56 NC_006273.1 + 141321 0.66 0.948532
Target:  5'- gGCGCaugCGCAcGACGCGcauCCaGUGGAa -3'
miRNA:   3'- -CGCGa--GUGU-CUGCGCcauGGaCACCU- -5'
29999 5' -56 NC_006273.1 + 131616 0.66 0.94812
Target:  5'- gGCGCUgGCAcgcGCGCGGUugCUcgaguaccggcgcGUGGu -3'
miRNA:   3'- -CGCGAgUGUc--UGCGCCAugGA-------------CACCu -5'
29999 5' -56 NC_006273.1 + 195719 0.67 0.94431
Target:  5'- gGCGUggUCGCuGACGCGGguuugcuuCCUauauaGUGGAc -3'
miRNA:   3'- -CGCG--AGUGuCUGCGCCau------GGA-----CACCU- -5'
29999 5' -56 NC_006273.1 + 68368 0.67 0.94431
Target:  5'- aGCaGCUgaGCAcGGCGCaGaACCUGUGGAc -3'
miRNA:   3'- -CG-CGAg-UGU-CUGCGcCaUGGACACCU- -5'
29999 5' -56 NC_006273.1 + 34752 0.67 0.94431
Target:  5'- -aGaCUCGCGGACuCGGUGCCccggccccugaaUGUGGu -3'
miRNA:   3'- cgC-GAGUGUCUGcGCCAUGG------------ACACCu -5'
29999 5' -56 NC_006273.1 + 107268 0.67 0.94431
Target:  5'- cGCGCUCA-AGACGCuGUGCCacccgGUGc- -3'
miRNA:   3'- -CGCGAGUgUCUGCGcCAUGGa----CACcu -5'
29999 5' -56 NC_006273.1 + 827 0.67 0.94431
Target:  5'- gGCGUggUCGCuGACGCGGguuugcuuCCUauauaGUGGAc -3'
miRNA:   3'- -CGCG--AGUGuCUGCGCCau------GGA-----CACCU- -5'
29999 5' -56 NC_006273.1 + 51924 0.67 0.939868
Target:  5'- cGUGCUgACGGACGUGGgagcgcACCUccaccgGGAa -3'
miRNA:   3'- -CGCGAgUGUCUGCGCCa-----UGGAca----CCU- -5'
29999 5' -56 NC_006273.1 + 97061 0.67 0.939412
Target:  5'- cGCuCUCACAGAaaaaaguCGCGGguuCCucguUGUGGAu -3'
miRNA:   3'- -CGcGAGUGUCU-------GCGCCau-GG----ACACCU- -5'
29999 5' -56 NC_006273.1 + 197989 0.67 0.935204
Target:  5'- gGCGCUC--AGuCGCGGcugaGCgUGUGGAg -3'
miRNA:   3'- -CGCGAGugUCuGCGCCa---UGgACACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.