miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 3' -50.6 NC_006273.1 + 186410 0.66 0.999117
Target:  5'- aGGagUUGCCGCA-GCaGCUGCAGACu-- -3'
miRNA:   3'- -CCa-AAUGGUGUcCG-CGGCGUUUGuag -5'
30001 3' -50.6 NC_006273.1 + 86260 0.66 0.999117
Target:  5'- ---cUGCCAgaAGGCGCguCGCGAGCGa- -3'
miRNA:   3'- ccaaAUGGUg-UCCGCG--GCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 100903 0.66 0.999117
Target:  5'- cGGUgaggUACCcgACGaggcGGCGCCGCGcuGCAg- -3'
miRNA:   3'- -CCAa---AUGG--UGU----CCGCGGCGUu-UGUag -5'
30001 3' -50.6 NC_006273.1 + 122697 0.66 0.999117
Target:  5'- uGGUguugACCACcu-CGCCGCGAAaAUCg -3'
miRNA:   3'- -CCAaa--UGGUGuccGCGGCGUUUgUAG- -5'
30001 3' -50.6 NC_006273.1 + 91615 0.66 0.999117
Target:  5'- cGGUUgcggACCACcaaAGGCGacaaCCGCAAcgAUCc -3'
miRNA:   3'- -CCAAa---UGGUG---UCCGC----GGCGUUugUAG- -5'
30001 3' -50.6 NC_006273.1 + 86993 0.66 0.999099
Target:  5'- ----aACCgACAGGCGUgaccagaCGCAGACAg- -3'
miRNA:   3'- ccaaaUGG-UGUCCGCG-------GCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 6044 0.66 0.998987
Target:  5'- cGGUUUGCUcuaagccggaugacaACGGGuCGucuuuuuaaauccCCGCAGAUAUCc -3'
miRNA:   3'- -CCAAAUGG---------------UGUCC-GC-------------GGCGUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 211709 0.66 0.998927
Target:  5'- cGGcggGCCucuGGGgGCCGCAcggagcgcGACGUCg -3'
miRNA:   3'- -CCaaaUGGug-UCCgCGGCGU--------UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 162812 0.66 0.998927
Target:  5'- ----aGCCGCGGuCGCCGCAGcuGCGg- -3'
miRNA:   3'- ccaaaUGGUGUCcGCGGCGUU--UGUag -5'
30001 3' -50.6 NC_006273.1 + 216141 0.66 0.998927
Target:  5'- cGGUUggcaauucuCCGgGGGCgGCCGCuuuCGUCc -3'
miRNA:   3'- -CCAAau-------GGUgUCCG-CGGCGuuuGUAG- -5'
30001 3' -50.6 NC_006273.1 + 1535 0.66 0.998927
Target:  5'- --cUUGCgCACAGGC-CCGCcAACAc- -3'
miRNA:   3'- ccaAAUG-GUGUCCGcGGCGuUUGUag -5'
30001 3' -50.6 NC_006273.1 + 117153 0.66 0.998927
Target:  5'- cGUUUcGCCugAGGCGgCGU--GCGUUa -3'
miRNA:   3'- cCAAA-UGGugUCCGCgGCGuuUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 30972 0.66 0.998906
Target:  5'- ----aGCC-CAGcguggucGCGCCGCAGcACGUCg -3'
miRNA:   3'- ccaaaUGGuGUC-------CGCGGCGUU-UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 112065 0.66 0.998702
Target:  5'- cGGUgcgcgUACgACAcGCGCUGUgcuGGCAUCg -3'
miRNA:   3'- -CCAa----AUGgUGUcCGCGGCGu--UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 100192 0.66 0.998702
Target:  5'- cGGgugGCUGCAGGCGUCcaGGAUGUCg -3'
miRNA:   3'- -CCaaaUGGUGUCCGCGGcgUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 219744 0.66 0.998702
Target:  5'- ----aGCCGCGGGC-CCGUAu-CGUCc -3'
miRNA:   3'- ccaaaUGGUGUCCGcGGCGUuuGUAG- -5'
30001 3' -50.6 NC_006273.1 + 43255 0.66 0.998702
Target:  5'- aGGgcUACCACAucGCGCCGCuguAGACc-- -3'
miRNA:   3'- -CCaaAUGGUGUc-CGCGGCG---UUUGuag -5'
30001 3' -50.6 NC_006273.1 + 20393 0.66 0.998702
Target:  5'- cGGUcgcUGCCACAgcagcGGCGUCGCcccaguuCGUCu -3'
miRNA:   3'- -CCAa--AUGGUGU-----CCGCGGCGuuu----GUAG- -5'
30001 3' -50.6 NC_006273.1 + 120664 0.66 0.998439
Target:  5'- cGGcg-AUCAUGGGCGCCcccaGCAAaaaccACAUCu -3'
miRNA:   3'- -CCaaaUGGUGUCCGCGG----CGUU-----UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 186786 0.66 0.998439
Target:  5'- cGGUcgACgGCAcauuauucccGGCGCCGCcAACGg- -3'
miRNA:   3'- -CCAaaUGgUGU----------CCGCGGCGuUUGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.