miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 3' -50.6 NC_006273.1 + 216141 0.66 0.998927
Target:  5'- cGGUUggcaauucuCCGgGGGCgGCCGCuuuCGUCc -3'
miRNA:   3'- -CCAAau-------GGUgUCCG-CGGCGuuuGUAG- -5'
30001 3' -50.6 NC_006273.1 + 186410 0.66 0.999117
Target:  5'- aGGagUUGCCGCA-GCaGCUGCAGACu-- -3'
miRNA:   3'- -CCa-AAUGGUGUcCG-CGGCGUUUGuag -5'
30001 3' -50.6 NC_006273.1 + 39033 0.66 0.997775
Target:  5'- cGGUUUACgACGaggaaaccaugcGGCaGUCGCAGGCGg- -3'
miRNA:   3'- -CCAAAUGgUGU------------CCG-CGGCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 43255 0.66 0.998702
Target:  5'- aGGgcUACCACAucGCGCCGCuguAGACc-- -3'
miRNA:   3'- -CCaaAUGGUGUc-CGCGGCG---UUUGuag -5'
30001 3' -50.6 NC_006273.1 + 196739 0.66 0.998131
Target:  5'- -----uUCGCGucGGCGCCGCAccccGCGUCg -3'
miRNA:   3'- ccaaauGGUGU--CCGCGGCGUu---UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 117153 0.66 0.998927
Target:  5'- cGUUUcGCCugAGGCGgCGU--GCGUUa -3'
miRNA:   3'- cCAAA-UGGugUCCGCgGCGuuUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 100903 0.66 0.999117
Target:  5'- cGGUgaggUACCcgACGaggcGGCGCCGCGcuGCAg- -3'
miRNA:   3'- -CCAa---AUGG--UGU----CCGCGGCGUu-UGUag -5'
30001 3' -50.6 NC_006273.1 + 219744 0.66 0.998702
Target:  5'- ----aGCCGCGGGC-CCGUAu-CGUCc -3'
miRNA:   3'- ccaaaUGGUGUCCGcGGCGUuuGUAG- -5'
30001 3' -50.6 NC_006273.1 + 1535 0.66 0.998927
Target:  5'- --cUUGCgCACAGGC-CCGCcAACAc- -3'
miRNA:   3'- ccaAAUG-GUGUCCGcGGCGuUUGUag -5'
30001 3' -50.6 NC_006273.1 + 78518 0.66 0.998131
Target:  5'- ----cGCCGCccggacaccGGGCGCCGUcaGGACGUa -3'
miRNA:   3'- ccaaaUGGUG---------UCCGCGGCG--UUUGUAg -5'
30001 3' -50.6 NC_006273.1 + 84876 0.66 0.998131
Target:  5'- aGGgcuugGCCACGGGaGCUGUuggcACGUCg -3'
miRNA:   3'- -CCaaa--UGGUGUCCgCGGCGuu--UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 142087 0.66 0.998131
Target:  5'- cGG-UUACCACGGcuuGCGCUGCcgcgAAACcUCg -3'
miRNA:   3'- -CCaAAUGGUGUC---CGCGGCG----UUUGuAG- -5'
30001 3' -50.6 NC_006273.1 + 1847 0.66 0.998131
Target:  5'- -----uUCGCGucGGCGCCGCAccccGCGUCg -3'
miRNA:   3'- ccaaauGGUGU--CCGCGGCGUu---UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 137773 0.66 0.998131
Target:  5'- cGUggGCCACGuacaucGGCGUCGuCGAcGCAUCu -3'
miRNA:   3'- cCAaaUGGUGU------CCGCGGC-GUU-UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 91615 0.66 0.999117
Target:  5'- cGGUUgcggACCACcaaAGGCGacaaCCGCAAcgAUCc -3'
miRNA:   3'- -CCAAa---UGGUG---UCCGC----GGCGUUugUAG- -5'
30001 3' -50.6 NC_006273.1 + 30972 0.66 0.998906
Target:  5'- ----aGCC-CAGcguggucGCGCCGCAGcACGUCg -3'
miRNA:   3'- ccaaaUGGuGUC-------CGCGGCGUU-UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 90282 0.66 0.998098
Target:  5'- cGGgcUGCCccGCAGGUggugaucagcgccGCCGCcagcGGCGUCg -3'
miRNA:   3'- -CCaaAUGG--UGUCCG-------------CGGCGu---UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 166662 0.66 0.997775
Target:  5'- cGUUgacaGCgGCaagugGGGCGCCGCGAucgaaggguACGUCa -3'
miRNA:   3'- cCAAa---UGgUG-----UCCGCGGCGUU---------UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 122697 0.66 0.999117
Target:  5'- uGGUguugACCACcu-CGCCGCGAAaAUCg -3'
miRNA:   3'- -CCAaa--UGGUGuccGCGGCGUUUgUAG- -5'
30001 3' -50.6 NC_006273.1 + 80519 0.66 0.997775
Target:  5'- ----gGCCGCccuGCGCCGUAGGCAa- -3'
miRNA:   3'- ccaaaUGGUGuc-CGCGGCGUUUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.