Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30001 | 3' | -50.6 | NC_006273.1 | + | 23634 | 1.13 | 0.008079 |
Target: 5'- cGGUUUACCACAGGCGCCGCAAACAUCu -3' miRNA: 3'- -CCAAAUGGUGUCCGCGGCGUUUGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 46081 | 0.83 | 0.426713 |
Target: 5'- ----cGCCGCAGGUGCCGCGGuguACGUCg -3' miRNA: 3'- ccaaaUGGUGUCCGCGGCGUU---UGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 56293 | 0.8 | 0.613452 |
Target: 5'- gGGUacgGCCGCGGGUGuCCGCGGACAc- -3' miRNA: 3'- -CCAaa-UGGUGUCCGC-GGCGUUUGUag -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 194976 | 0.78 | 0.706234 |
Target: 5'- gGGUgUGCCGCGGGUguGUCGCGGGCGUg -3' miRNA: 3'- -CCAaAUGGUGUCCG--CGGCGUUUGUAg -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 234914 | 0.78 | 0.706234 |
Target: 5'- gGGUgUGCCGCGGGUguGUCGCGGGCGUg -3' miRNA: 3'- -CCAaAUGGUGUCCG--CGGCGUUUGUAg -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 83 | 0.78 | 0.706234 |
Target: 5'- gGGUgUGCCGCGGGUguGUCGCGGGCGUg -3' miRNA: 3'- -CCAaAUGGUGUCCG--CGGCGUUUGUAg -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 43453 | 0.76 | 0.811801 |
Target: 5'- cGGUUUucACC-CGGGCGCCGCuGACu-- -3' miRNA: 3'- -CCAAA--UGGuGUCCGCGGCGuUUGuag -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 24246 | 0.75 | 0.829175 |
Target: 5'- ----aACCGCGGGcCGCC-CAAACAUCu -3' miRNA: 3'- ccaaaUGGUGUCC-GCGGcGUUUGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 103724 | 0.75 | 0.837591 |
Target: 5'- ----cGCUuCGGGCGCCGCGucAGCGUCg -3' miRNA: 3'- ccaaaUGGuGUCCGCGGCGU--UUGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 40402 | 0.75 | 0.837591 |
Target: 5'- gGGgagGCCACAGGCGgCGCAuuCGa- -3' miRNA: 3'- -CCaaaUGGUGUCCGCgGCGUuuGUag -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 130223 | 0.74 | 0.861658 |
Target: 5'- uGGgcgagGCCGC-GGCGCCGC--GCAUCc -3' miRNA: 3'- -CCaaa--UGGUGuCCGCGGCGuuUGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 204374 | 0.74 | 0.861658 |
Target: 5'- --gUUACCcCAGGUGCCGUAGGCucUCg -3' miRNA: 3'- ccaAAUGGuGUCCGCGGCGUUUGu-AG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 209879 | 0.74 | 0.869264 |
Target: 5'- uGGUgaaACCACgucgcGGGCGCCGCGuAGCAg- -3' miRNA: 3'- -CCAaa-UGGUG-----UCCGCGGCGU-UUGUag -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 79772 | 0.74 | 0.876651 |
Target: 5'- ---gUACCACcGGCGCCGUGAuuGUCg -3' miRNA: 3'- ccaaAUGGUGuCCGCGGCGUUugUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 22715 | 0.74 | 0.883814 |
Target: 5'- ----gACCGuCAGGCGCCgGCAuggAGCGUCg -3' miRNA: 3'- ccaaaUGGU-GUCCGCGG-CGU---UUGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 163016 | 0.73 | 0.897449 |
Target: 5'- cGGUaggACaCGCGGGCGCCggacaGCAGgcGCAUCa -3' miRNA: 3'- -CCAaa-UG-GUGUCCGCGG-----CGUU--UGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 130750 | 0.73 | 0.903913 |
Target: 5'- ----gGCCACAGGCGCggcuuUGCGAcggcACAUCa -3' miRNA: 3'- ccaaaUGGUGUCCGCG-----GCGUU----UGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 162252 | 0.73 | 0.910137 |
Target: 5'- ----aGCCACcGGCGCaguuugcggCGCAGACGUCg -3' miRNA: 3'- ccaaaUGGUGuCCGCG---------GCGUUUGUAG- -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 152382 | 0.73 | 0.921856 |
Target: 5'- aGGUgUGCCACcGGCGUgGUGAACAg- -3' miRNA: 3'- -CCAaAUGGUGuCCGCGgCGUUUGUag -5' |
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30001 | 3' | -50.6 | NC_006273.1 | + | 87492 | 0.72 | 0.932596 |
Target: 5'- aGGcg-GCC-CGGGCGCCgacGCGAAUGUCg -3' miRNA: 3'- -CCaaaUGGuGUCCGCGG---CGUUUGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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