miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 3' -50.6 NC_006273.1 + 72163 0.66 0.998439
Target:  5'- ----aGgCugAGGCGCCGCGGAUu-- -3'
miRNA:   3'- ccaaaUgGugUCCGCGGCGUUUGuag -5'
30001 3' -50.6 NC_006273.1 + 106545 0.66 0.998439
Target:  5'- ----cGCgACAGGCGCUGaaccGCAUCc -3'
miRNA:   3'- ccaaaUGgUGUCCGCGGCguu-UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 205758 0.66 0.99841
Target:  5'- ----cACCACGGGCaguucauGCCGUuGACGUa -3'
miRNA:   3'- ccaaaUGGUGUCCG-------CGGCGuUUGUAg -5'
30001 3' -50.6 NC_006273.1 + 147783 0.66 0.99826
Target:  5'- ----cGCCGCAacagcggcgacggacGGCGUCGCAu-CAUCa -3'
miRNA:   3'- ccaaaUGGUGU---------------CCGCGGCGUuuGUAG- -5'
30001 3' -50.6 NC_006273.1 + 196800 0.66 0.998131
Target:  5'- ----aGCCGCAGGCGCUcugccaguugGCGAGggauacCGUCg -3'
miRNA:   3'- ccaaaUGGUGUCCGCGG----------CGUUU------GUAG- -5'
30001 3' -50.6 NC_006273.1 + 43143 0.66 0.998131
Target:  5'- uGGUaUACCGCguuAGGCaCCGCGuGGCGUa -3'
miRNA:   3'- -CCAaAUGGUG---UCCGcGGCGU-UUGUAg -5'
30001 3' -50.6 NC_006273.1 + 17071 0.66 0.998131
Target:  5'- cGUUUACCaucugGCAGGCGCgCGUGGuCcgCg -3'
miRNA:   3'- cCAAAUGG-----UGUCCGCG-GCGUUuGuaG- -5'
30001 3' -50.6 NC_006273.1 + 1847 0.66 0.998131
Target:  5'- -----uUCGCGucGGCGCCGCAccccGCGUCg -3'
miRNA:   3'- ccaaauGGUGU--CCGCGGCGUu---UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 84876 0.66 0.998131
Target:  5'- aGGgcuugGCCACGGGaGCUGUuggcACGUCg -3'
miRNA:   3'- -CCaaa--UGGUGUCCgCGGCGuu--UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 142087 0.66 0.998131
Target:  5'- cGG-UUACCACGGcuuGCGCUGCcgcgAAACcUCg -3'
miRNA:   3'- -CCaAAUGGUGUC---CGCGGCG----UUUGuAG- -5'
30001 3' -50.6 NC_006273.1 + 137773 0.66 0.998131
Target:  5'- cGUggGCCACGuacaucGGCGUCGuCGAcGCAUCu -3'
miRNA:   3'- cCAaaUGGUGU------CCGCGGC-GUU-UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 78518 0.66 0.998131
Target:  5'- ----cGCCGCccggacaccGGGCGCCGUcaGGACGUa -3'
miRNA:   3'- ccaaaUGGUG---------UCCGCGGCG--UUUGUAg -5'
30001 3' -50.6 NC_006273.1 + 196739 0.66 0.998131
Target:  5'- -----uUCGCGucGGCGCCGCAccccGCGUCg -3'
miRNA:   3'- ccaaauGGUGU--CCGCGGCGUu---UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 90282 0.66 0.998098
Target:  5'- cGGgcUGCCccGCAGGUggugaucagcgccGCCGCcagcGGCGUCg -3'
miRNA:   3'- -CCaaAUGG--UGUCCG-------------CGGCGu---UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 161622 0.66 0.997775
Target:  5'- uGGUc-GCCGCuggcGGCGCCGCugccGGGCcUCg -3'
miRNA:   3'- -CCAaaUGGUGu---CCGCGGCG----UUUGuAG- -5'
30001 3' -50.6 NC_006273.1 + 39033 0.66 0.997775
Target:  5'- cGGUUUACgACGaggaaaccaugcGGCaGUCGCAGGCGg- -3'
miRNA:   3'- -CCAAAUGgUGU------------CCG-CGGCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 80519 0.66 0.997775
Target:  5'- ----gGCCGCccuGCGCCGUAGGCAa- -3'
miRNA:   3'- ccaaaUGGUGuc-CGCGGCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 166662 0.66 0.997775
Target:  5'- cGUUgacaGCgGCaagugGGGCGCCGCGAucgaaggguACGUCa -3'
miRNA:   3'- cCAAa---UGgUG-----UCCGCGGCGUU---------UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 179274 0.67 0.997363
Target:  5'- cGUUU-CgACGaaauccggcGGCGCCGCcaGAGCAUCa -3'
miRNA:   3'- cCAAAuGgUGU---------CCGCGGCG--UUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 203984 0.67 0.997363
Target:  5'- cGGUgaGCCGCGGcgauucgggcGUGCCGCGAuGCcgCa -3'
miRNA:   3'- -CCAaaUGGUGUC----------CGCGGCGUU-UGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.