miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 3' -50.6 NC_006273.1 + 83 0.78 0.706234
Target:  5'- gGGUgUGCCGCGGGUguGUCGCGGGCGUg -3'
miRNA:   3'- -CCAaAUGGUGUCCG--CGGCGUUUGUAg -5'
30001 3' -50.6 NC_006273.1 + 583 0.69 0.985506
Target:  5'- ----cGCCuuuauGGCGCCGCAAGCGc- -3'
miRNA:   3'- ccaaaUGGugu--CCGCGGCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 1201 0.69 0.987158
Target:  5'- ----gGCCAUGGGCGCCGUGuggcgcgcGGCGUUu -3'
miRNA:   3'- ccaaaUGGUGUCCGCGGCGU--------UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 1535 0.66 0.998927
Target:  5'- --cUUGCgCACAGGC-CCGCcAACAc- -3'
miRNA:   3'- ccaAAUG-GUGUCCGcGGCGuUUGUag -5'
30001 3' -50.6 NC_006273.1 + 1847 0.66 0.998131
Target:  5'- -----uUCGCGucGGCGCCGCAccccGCGUCg -3'
miRNA:   3'- ccaaauGGUGU--CCGCGGCGUu---UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 6044 0.66 0.998987
Target:  5'- cGGUUUGCUcuaagccggaugacaACGGGuCGucuuuuuaaauccCCGCAGAUAUCc -3'
miRNA:   3'- -CCAAAUGG---------------UGUCC-GC-------------GGCGUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 16400 0.67 0.997363
Target:  5'- cGUUUGCUacGCGGGUaCCGCAcGACGUg -3'
miRNA:   3'- cCAAAUGG--UGUCCGcGGCGU-UUGUAg -5'
30001 3' -50.6 NC_006273.1 + 16646 0.7 0.977236
Target:  5'- --gUUGCCGCugguaccugcuGGGCGCCGUggGC-UCc -3'
miRNA:   3'- ccaAAUGGUG-----------UCCGCGGCGuuUGuAG- -5'
30001 3' -50.6 NC_006273.1 + 17071 0.66 0.998131
Target:  5'- cGUUUACCaucugGCAGGCGCgCGUGGuCcgCg -3'
miRNA:   3'- cCAAAUGG-----UGUCCGCG-GCGUUuGuaG- -5'
30001 3' -50.6 NC_006273.1 + 19493 0.68 0.991256
Target:  5'- ---gUGCCAgCuGGCGCgGCGGACAg- -3'
miRNA:   3'- ccaaAUGGU-GuCCGCGgCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 20393 0.66 0.998702
Target:  5'- cGGUcgcUGCCACAgcagcGGCGUCGCcccaguuCGUCu -3'
miRNA:   3'- -CCAa--AUGGUGU-----CCGCGGCGuuu----GUAG- -5'
30001 3' -50.6 NC_006273.1 + 22247 0.68 0.992364
Target:  5'- ----gAUgACGGGCGCCgGCGAGCGa- -3'
miRNA:   3'- ccaaaUGgUGUCCGCGG-CGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 22715 0.74 0.883814
Target:  5'- ----gACCGuCAGGCGCCgGCAuggAGCGUCg -3'
miRNA:   3'- ccaaaUGGU-GUCCGCGG-CGU---UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 23634 1.13 0.008079
Target:  5'- cGGUUUACCACAGGCGCCGCAAACAUCu -3'
miRNA:   3'- -CCAAAUGGUGUCCGCGGCGUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 24246 0.75 0.829175
Target:  5'- ----aACCGCGGGcCGCC-CAAACAUCu -3'
miRNA:   3'- ccaaaUGGUGUCC-GCGGcGUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 25415 0.69 0.985506
Target:  5'- gGGUcgacugUUGCCGCGuGGCGCUGCAcACc-- -3'
miRNA:   3'- -CCA------AAUGGUGU-CCGCGGCGUuUGuag -5'
30001 3' -50.6 NC_006273.1 + 26122 0.69 0.988662
Target:  5'- ----cGCCGcCGGGCGCUGCGgucccGACAUg -3'
miRNA:   3'- ccaaaUGGU-GUCCGCGGCGU-----UUGUAg -5'
30001 3' -50.6 NC_006273.1 + 27153 0.67 0.997274
Target:  5'- cGGUgacaguggauCCAUgagagAGGCGCCGCAcgcuGCAUg -3'
miRNA:   3'- -CCAaau-------GGUG-----UCCGCGGCGUu---UGUAg -5'
30001 3' -50.6 NC_006273.1 + 30972 0.66 0.998906
Target:  5'- ----aGCC-CAGcguggucGCGCCGCAGcACGUCg -3'
miRNA:   3'- ccaaaUGGuGUC-------CGCGGCGUU-UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 33020 0.67 0.996349
Target:  5'- aGGUggcgACCGCGcuGGCGgCGCAuaaaauCGUCu -3'
miRNA:   3'- -CCAaa--UGGUGU--CCGCgGCGUuu----GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.