miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 3' -50.6 NC_006273.1 + 115603 0.7 0.979569
Target:  5'- cGGUgcgggUGCCgggACAGcGUGCCGgCGAACGUUc -3'
miRNA:   3'- -CCAa----AUGG---UGUC-CGCGGC-GUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 87492 0.72 0.932596
Target:  5'- aGGcg-GCC-CGGGCGCCgacGCGAAUGUCg -3'
miRNA:   3'- -CCaaaUGGuGUCCGCGG---CGUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 142848 0.71 0.958993
Target:  5'- ----gGCCACGGGCugcugucuGCUGCAcAACGUCa -3'
miRNA:   3'- ccaaaUGGUGUCCG--------CGGCGU-UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 204688 0.71 0.962572
Target:  5'- cGGgg-ACCACAGGaucauaGCCGCcGGCAc- -3'
miRNA:   3'- -CCaaaUGGUGUCCg-----CGGCGuUUGUag -5'
30001 3' -50.6 NC_006273.1 + 62174 0.71 0.965927
Target:  5'- cGgcUGCCACggAGGCGCgGCccuACGUCa -3'
miRNA:   3'- cCaaAUGGUG--UCCGCGgCGuu-UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 198244 0.7 0.969065
Target:  5'- ----gGCCACAGGCcacgGCCGCcAGCAc- -3'
miRNA:   3'- ccaaaUGGUGUCCG----CGGCGuUUGUag -5'
30001 3' -50.6 NC_006273.1 + 74841 0.7 0.969065
Target:  5'- ----aGCCGCGGGC-CCGCGuccuCGUCg -3'
miRNA:   3'- ccaaaUGGUGUCCGcGGCGUuu--GUAG- -5'
30001 3' -50.6 NC_006273.1 + 76659 0.7 0.971135
Target:  5'- cGGUauuUUGCCACguccugcgucaggcGGGCGUCaCGGGCAUCu -3'
miRNA:   3'- -CCA---AAUGGUG--------------UCCGCGGcGUUUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 204720 0.7 0.977236
Target:  5'- cGGccgGCCGCAGGaaGCCGCccggcGCGUCg -3'
miRNA:   3'- -CCaaaUGGUGUCCg-CGGCGuu---UGUAG- -5'
30001 3' -50.6 NC_006273.1 + 152382 0.73 0.921856
Target:  5'- aGGUgUGCCACcGGCGUgGUGAACAg- -3'
miRNA:   3'- -CCAaAUGGUGuCCGCGgCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 22715 0.74 0.883814
Target:  5'- ----gACCGuCAGGCGCCgGCAuggAGCGUCg -3'
miRNA:   3'- ccaaaUGGU-GUCCGCGG-CGU---UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 79772 0.74 0.876651
Target:  5'- ---gUACCACcGGCGCCGUGAuuGUCg -3'
miRNA:   3'- ccaaAUGGUGuCCGCGGCGUUugUAG- -5'
30001 3' -50.6 NC_006273.1 + 56293 0.8 0.613452
Target:  5'- gGGUacgGCCGCGGGUGuCCGCGGACAc- -3'
miRNA:   3'- -CCAaa-UGGUGUCCGC-GGCGUUUGUag -5'
30001 3' -50.6 NC_006273.1 + 194976 0.78 0.706234
Target:  5'- gGGUgUGCCGCGGGUguGUCGCGGGCGUg -3'
miRNA:   3'- -CCAaAUGGUGUCCG--CGGCGUUUGUAg -5'
30001 3' -50.6 NC_006273.1 + 43453 0.76 0.811801
Target:  5'- cGGUUUucACC-CGGGCGCCGCuGACu-- -3'
miRNA:   3'- -CCAAA--UGGuGUCCGCGGCGuUUGuag -5'
30001 3' -50.6 NC_006273.1 + 40402 0.75 0.837591
Target:  5'- gGGgagGCCACAGGCGgCGCAuuCGa- -3'
miRNA:   3'- -CCaaaUGGUGUCCGCgGCGUuuGUag -5'
30001 3' -50.6 NC_006273.1 + 103724 0.75 0.837591
Target:  5'- ----cGCUuCGGGCGCCGCGucAGCGUCg -3'
miRNA:   3'- ccaaaUGGuGUCCGCGGCGU--UUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 204374 0.74 0.861658
Target:  5'- --gUUACCcCAGGUGCCGUAGGCucUCg -3'
miRNA:   3'- ccaAAUGGuGUCCGCGGCGUUUGu-AG- -5'
30001 3' -50.6 NC_006273.1 + 130223 0.74 0.861658
Target:  5'- uGGgcgagGCCGC-GGCGCCGC--GCAUCc -3'
miRNA:   3'- -CCaaa--UGGUGuCCGCGGCGuuUGUAG- -5'
30001 3' -50.6 NC_006273.1 + 209879 0.74 0.869264
Target:  5'- uGGUgaaACCACgucgcGGGCGCCGCGuAGCAg- -3'
miRNA:   3'- -CCAaa-UGGUG-----UCCGCGGCGU-UUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.