miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30001 5' -64.9 NC_006273.1 + 204705 0.66 0.660132
Target:  5'- gGUGUcgCCG-GCGaGCCCCgAGGcGcGCCCg -3'
miRNA:   3'- -CGCGa-GGCaCGC-CGGGGgUCU-C-CGGG- -5'
30001 5' -64.9 NC_006273.1 + 200847 0.66 0.650811
Target:  5'- cGCGCUUCGagGCGuGCCCUU-GccGCCCg -3'
miRNA:   3'- -CGCGAGGCa-CGC-CGGGGGuCucCGGG- -5'
30001 5' -64.9 NC_006273.1 + 185275 0.66 0.641477
Target:  5'- cUGCUCCGUGUgucGGCCgCUCAaacgucGGGCCg -3'
miRNA:   3'- cGCGAGGCACG---CCGG-GGGUc-----UCCGGg -5'
30001 5' -64.9 NC_006273.1 + 30662 0.66 0.641477
Target:  5'- aCGCgCCGgGCGGCUUCCuGcGGCCg -3'
miRNA:   3'- cGCGaGGCaCGCCGGGGGuCuCCGGg -5'
30001 5' -64.9 NC_006273.1 + 193350 0.66 0.641477
Target:  5'- aCGUaaaCCGgGCGcCUCCCGGAGGCUCu -3'
miRNA:   3'- cGCGa--GGCaCGCcGGGGGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 222411 0.66 0.622798
Target:  5'- aCGUagUUCGUGaUGGCgUgUAGAGGCCCg -3'
miRNA:   3'- cGCG--AGGCAC-GCCGgGgGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 34113 0.66 0.621864
Target:  5'- cGCGC-CCGUcGCcgcacucgcaaaaGGCCgCgUAGAGGUCCu -3'
miRNA:   3'- -CGCGaGGCA-CG-------------CCGG-GgGUCUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 202159 0.67 0.604142
Target:  5'- cCGCcCCG-G-GGCCCUCGGugcgcuaccGGGCCCa -3'
miRNA:   3'- cGCGaGGCaCgCCGGGGGUC---------UCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 105318 0.67 0.594837
Target:  5'- aGCGUUCCu--CGGUUCCC-GAGGCgCCa -3'
miRNA:   3'- -CGCGAGGcacGCCGGGGGuCUCCG-GG- -5'
30001 5' -64.9 NC_006273.1 + 56103 0.67 0.593908
Target:  5'- aUGCUCUG-GCGGCgCCgCCGGAuuucgucgaaacgGGCCg -3'
miRNA:   3'- cGCGAGGCaCGCCG-GG-GGUCU-------------CCGGg -5'
30001 5' -64.9 NC_006273.1 + 169570 0.67 0.585555
Target:  5'- uGCGCcgCCGauUGCGGaCCgCAGGGGCg- -3'
miRNA:   3'- -CGCGa-GGC--ACGCCgGGgGUCUCCGgg -5'
30001 5' -64.9 NC_006273.1 + 195170 0.67 0.576301
Target:  5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3'
miRNA:   3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 197480 0.67 0.576301
Target:  5'- cCGCUCacaacgCGUGCGaGaCCUgCGcGAGGCCCg -3'
miRNA:   3'- cGCGAG------GCACGC-C-GGGgGU-CUCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 277 0.67 0.576301
Target:  5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3'
miRNA:   3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 235108 0.67 0.576301
Target:  5'- cGCGggUUGUGCaGUgugCCCCGG-GGCCCg -3'
miRNA:   3'- -CGCgaGGCACGcCG---GGGGUCuCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 148666 0.67 0.56708
Target:  5'- gGUGCUCUcgugGUGCGGCCugCCCGacaucguGGGCCg -3'
miRNA:   3'- -CGCGAGG----CACGCCGG--GGGUc------UCCGGg -5'
30001 5' -64.9 NC_006273.1 + 45004 0.67 0.561566
Target:  5'- uCGUUcCCGUcccucuccucccuccGCGGCCCCCAcggcGGcGGCCUg -3'
miRNA:   3'- cGCGA-GGCA---------------CGCCGGGGGU----CU-CCGGG- -5'
30001 5' -64.9 NC_006273.1 + 141129 0.67 0.548757
Target:  5'- gGCGCagCGUGCGGaCCgCAGcacGGCCg -3'
miRNA:   3'- -CGCGagGCACGCCgGGgGUCu--CCGGg -5'
30001 5' -64.9 NC_006273.1 + 119473 0.67 0.548757
Target:  5'- cGCGCUuuGUGCaGCgCCaCAccGGCCUg -3'
miRNA:   3'- -CGCGAggCACGcCGgGG-GUcuCCGGG- -5'
30001 5' -64.9 NC_006273.1 + 48839 0.67 0.546935
Target:  5'- -aGCUCC-UGCGGCCacaggugcguagCCAGGGGCg- -3'
miRNA:   3'- cgCGAGGcACGCCGGg-----------GGUCUCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.